Hb_002903_060

Information

Type -
Description -
Location Contig2903: 89309-92548
Sequence    

Annotation

kegg
ID pmum:103324715
description uncharacterized LOC103324715
nr
ID XP_012091559.1
description PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JDU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21404 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30435: 89483-91813
cDNA
(Sanger)
(ID:Location)		 011_N22.ab1: 89538-91625

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002903_060 0.0 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
2 Hb_007254_070 0.0652461333 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
3 Hb_000245_040 0.0766377259 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
4 Hb_000028_280 0.0804548317 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
5 Hb_000191_150 0.0821559974 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
6 Hb_002213_070 0.0822836672 - - epsilon-adaptin family protein [Populus trichocarpa]
7 Hb_011485_070 0.0837239046 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
8 Hb_000173_490 0.0839865147 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
9 Hb_000343_120 0.0853066103 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
10 Hb_004994_220 0.0853155659 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
11 Hb_007765_110 0.0855801838 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
12 Hb_001341_170 0.0875650973 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
13 Hb_003761_010 0.0875901995 - - alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_004355_020 0.0878818769 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
15 Hb_000009_320 0.0879422886 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66631 [Jatropha curcas]
16 Hb_000107_490 0.0880039191 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
17 Hb_002675_070 0.0903171888 - - PREDICTED: protein CASC3 [Jatropha curcas]
18 Hb_167498_010 0.0904346364 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
19 Hb_000780_230 0.0910747331 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
20 Hb_000297_010 0.0910963979 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002903_060 Hb_002903_060 Hb_007254_070 Hb_007254_070 Hb_002903_060--Hb_007254_070 Hb_000245_040 Hb_000245_040 Hb_002903_060--Hb_000245_040 Hb_000028_280 Hb_000028_280 Hb_002903_060--Hb_000028_280 Hb_000191_150 Hb_000191_150 Hb_002903_060--Hb_000191_150 Hb_002213_070 Hb_002213_070 Hb_002903_060--Hb_002213_070 Hb_011485_070 Hb_011485_070 Hb_002903_060--Hb_011485_070 Hb_167498_010 Hb_167498_010 Hb_007254_070--Hb_167498_010 Hb_004355_020 Hb_004355_020 Hb_007254_070--Hb_004355_020 Hb_120327_010 Hb_120327_010 Hb_007254_070--Hb_120327_010 Hb_000395_130 Hb_000395_130 Hb_007254_070--Hb_000395_130 Hb_003158_010 Hb_003158_010 Hb_007254_070--Hb_003158_010 Hb_000107_490 Hb_000107_490 Hb_000245_040--Hb_000107_490 Hb_000297_010 Hb_000297_010 Hb_000245_040--Hb_000297_010 Hb_000866_170 Hb_000866_170 Hb_000245_040--Hb_000866_170 Hb_004724_150 Hb_004724_150 Hb_000245_040--Hb_004724_150 Hb_006938_080 Hb_006938_080 Hb_000245_040--Hb_006938_080 Hb_000890_210 Hb_000890_210 Hb_000245_040--Hb_000890_210 Hb_000343_120 Hb_000343_120 Hb_000028_280--Hb_000343_120 Hb_002740_110 Hb_002740_110 Hb_000028_280--Hb_002740_110 Hb_004143_130 Hb_004143_130 Hb_000028_280--Hb_004143_130 Hb_003605_110 Hb_003605_110 Hb_000028_280--Hb_003605_110 Hb_003253_040 Hb_003253_040 Hb_000028_280--Hb_003253_040 Hb_004994_220 Hb_004994_220 Hb_000028_280--Hb_004994_220 Hb_000116_410 Hb_000116_410 Hb_000191_150--Hb_000116_410 Hb_000191_150--Hb_000343_120 Hb_123352_020 Hb_123352_020 Hb_000191_150--Hb_123352_020 Hb_000205_100 Hb_000205_100 Hb_000191_150--Hb_000205_100 Hb_005731_130 Hb_005731_130 Hb_000191_150--Hb_005731_130 Hb_000127_040 Hb_000127_040 Hb_002213_070--Hb_000127_040 Hb_001492_020 Hb_001492_020 Hb_002213_070--Hb_001492_020 Hb_000613_050 Hb_000613_050 Hb_002213_070--Hb_000613_050 Hb_002110_190 Hb_002110_190 Hb_002213_070--Hb_002110_190 Hb_000789_310 Hb_000789_310 Hb_002213_070--Hb_000789_310 Hb_002213_070--Hb_000890_210 Hb_000185_040 Hb_000185_040 Hb_011485_070--Hb_000185_040 Hb_001341_170 Hb_001341_170 Hb_011485_070--Hb_001341_170 Hb_004032_150 Hb_004032_150 Hb_011485_070--Hb_004032_150 Hb_000092_170 Hb_000092_170 Hb_011485_070--Hb_000092_170 Hb_002481_080 Hb_002481_080 Hb_011485_070--Hb_002481_080 Hb_002675_070 Hb_002675_070 Hb_011485_070--Hb_002675_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7704 31.6478 12.1865 19.1785 26.4627 30.1271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.5835 21.7648 29.4058 25.4865 16.8335

CAGE analysis