Hb_000853_420

Information

Type -
Description -
Location Contig853: 298632-301674
Sequence    

Annotation

kegg
ID rcu:RCOM_1347740
description phosphoribosylamine-glycine ligase, putative (EC:6.3.3.1)
nr
ID XP_012082861.1
description PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID P52424
description Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial OS=Vigna unguiculata GN=PUR5 PE=2 SV=1
trembl
ID A0A067JWB5
description Phosphoribosylformylglycinamidine cyclo-ligase OS=Jatropha curcas GN=JCGZ_14002 PE=3 SV=1
Gene Ontology
ID GO:0005739
description phosphoribosylformylglycinamidine cyclo- chloroplastic mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60511: 298608-301620
cDNA
(Sanger)
(ID:Location)		 018_N08.ab1: 300608-301558 , 020_M22.ab1: 299817-301567 , 034_L20.ab1: 299823-301620

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_420 0.0 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_000853_170 0.0566953379 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
3 Hb_002603_120 0.0586224463 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
4 Hb_004491_010 0.0605273922 - - 60S ribosomal protein L51, putative [Ricinus communis]
5 Hb_011671_430 0.0655262513 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
6 Hb_000613_090 0.0676331573 - - PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]
7 Hb_001006_140 0.0680143153 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
8 Hb_000038_170 0.0689208285 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
9 Hb_001552_020 0.0693342164 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
10 Hb_001595_030 0.0700596321 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
11 Hb_000096_070 0.0731799246 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
12 Hb_000034_100 0.0735195991 - - dnajc14 protein, putative [Ricinus communis]
13 Hb_001258_090 0.0736269879 - - PREDICTED: protein spt2-like [Jatropha curcas]
14 Hb_006922_100 0.0764670808 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
15 Hb_005694_110 0.0790997494 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
16 Hb_001390_110 0.0802851121 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
17 Hb_015746_010 0.0803466521 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
18 Hb_000365_120 0.0807316683 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
19 Hb_001259_090 0.0816307097 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
20 Hb_000059_330 0.0818777604 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000853_420 Hb_000853_420 Hb_000853_170 Hb_000853_170 Hb_000853_420--Hb_000853_170 Hb_002603_120 Hb_002603_120 Hb_000853_420--Hb_002603_120 Hb_004491_010 Hb_004491_010 Hb_000853_420--Hb_004491_010 Hb_011671_430 Hb_011671_430 Hb_000853_420--Hb_011671_430 Hb_000613_090 Hb_000613_090 Hb_000853_420--Hb_000613_090 Hb_001006_140 Hb_001006_140 Hb_000853_420--Hb_001006_140 Hb_000109_090 Hb_000109_090 Hb_000853_170--Hb_000109_090 Hb_005276_210 Hb_005276_210 Hb_000853_170--Hb_005276_210 Hb_000853_170--Hb_001006_140 Hb_015746_010 Hb_015746_010 Hb_000853_170--Hb_015746_010 Hb_004577_020 Hb_004577_020 Hb_000853_170--Hb_004577_020 Hb_001595_030 Hb_001595_030 Hb_002603_120--Hb_001595_030 Hb_000030_300 Hb_000030_300 Hb_002603_120--Hb_000030_300 Hb_000629_010 Hb_000629_010 Hb_002603_120--Hb_000629_010 Hb_005188_050 Hb_005188_050 Hb_002603_120--Hb_005188_050 Hb_002603_120--Hb_004491_010 Hb_002685_170 Hb_002685_170 Hb_004491_010--Hb_002685_170 Hb_028995_040 Hb_028995_040 Hb_004491_010--Hb_028995_040 Hb_000041_270 Hb_000041_270 Hb_004491_010--Hb_000041_270 Hb_003126_080 Hb_003126_080 Hb_004491_010--Hb_003126_080 Hb_000038_170 Hb_000038_170 Hb_011671_430--Hb_000038_170 Hb_011671_430--Hb_004577_020 Hb_014497_050 Hb_014497_050 Hb_011671_430--Hb_014497_050 Hb_003058_190 Hb_003058_190 Hb_011671_430--Hb_003058_190 Hb_004355_020 Hb_004355_020 Hb_011671_430--Hb_004355_020 Hb_003158_010 Hb_003158_010 Hb_011671_430--Hb_003158_010 Hb_000613_090--Hb_000038_170 Hb_000613_090--Hb_011671_430 Hb_022250_030 Hb_022250_030 Hb_000613_090--Hb_022250_030 Hb_000034_100 Hb_000034_100 Hb_000613_090--Hb_000034_100 Hb_000487_110 Hb_000487_110 Hb_000613_090--Hb_000487_110 Hb_000051_070 Hb_000051_070 Hb_001006_140--Hb_000051_070 Hb_001006_140--Hb_000038_170 Hb_001199_020 Hb_001199_020 Hb_001006_140--Hb_001199_020 Hb_000120_790 Hb_000120_790 Hb_001006_140--Hb_000120_790 Hb_003952_070 Hb_003952_070 Hb_001006_140--Hb_003952_070 Hb_002518_280 Hb_002518_280 Hb_001006_140--Hb_002518_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.9217 38.4949 24.924 17.1961 51.2423 47.9859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.2613 51.0969 41.582 31.6634 25.3479

CAGE analysis