Hb_007441_040

Information

Type -
Description -
Location Contig7441: 29149-31738
Sequence    

Annotation

kegg
ID tcc:TCM_005726
description Mago nashi family protein
nr
ID XP_012083713.1
description PREDICTED: protein mago nashi homolog [Jatropha curcas]
swissprot
ID O65806
description Protein mago nashi homolog OS=Euphorbia lagascae PE=2 SV=1
trembl
ID A0A067K9B5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14641 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein mago nashi homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56590: 30157-31700
cDNA
(Sanger)
(ID:Location)		 010_E07.ab1: 7159-29881

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_040 0.0 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
2 Hb_000102_020 0.0428598747 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
3 Hb_009182_010 0.0546410492 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
4 Hb_006541_010 0.0692023681 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
5 Hb_001814_050 0.0729341328 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_007012_060 0.0760675406 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
7 Hb_000656_170 0.0768426083 - - lsm1, putative [Ricinus communis]
8 Hb_000261_140 0.0787883481 - - -
9 Hb_001484_070 0.0791134335 - - conserved hypothetical protein [Ricinus communis]
10 Hb_091433_020 0.0796668846 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
11 Hb_004889_010 0.079824232 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
12 Hb_001505_020 0.0798813275 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
13 Hb_006816_530 0.0812989628 - - 60S ribosomal protein L18, putative [Ricinus communis]
14 Hb_009051_030 0.0814997669 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
15 Hb_004767_080 0.0815580682 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
16 Hb_004157_030 0.0815768869 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
17 Hb_001214_160 0.0821753409 - - 60S ribosomal protein L27B [Hevea brasiliensis]
18 Hb_001085_120 0.0825452726 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
19 Hb_143766_010 0.0843698337 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
20 Hb_011644_030 0.0843974955 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_007441_040 Hb_007441_040 Hb_000102_020 Hb_000102_020 Hb_007441_040--Hb_000102_020 Hb_009182_010 Hb_009182_010 Hb_007441_040--Hb_009182_010 Hb_006541_010 Hb_006541_010 Hb_007441_040--Hb_006541_010 Hb_001814_050 Hb_001814_050 Hb_007441_040--Hb_001814_050 Hb_007012_060 Hb_007012_060 Hb_007441_040--Hb_007012_060 Hb_000656_170 Hb_000656_170 Hb_007441_040--Hb_000656_170 Hb_009051_030 Hb_009051_030 Hb_000102_020--Hb_009051_030 Hb_000261_140 Hb_000261_140 Hb_000102_020--Hb_000261_140 Hb_000102_020--Hb_000656_170 Hb_000102_020--Hb_009182_010 Hb_001214_160 Hb_001214_160 Hb_000102_020--Hb_001214_160 Hb_143766_010 Hb_143766_010 Hb_009182_010--Hb_143766_010 Hb_000982_090 Hb_000982_090 Hb_009182_010--Hb_000982_090 Hb_091433_020 Hb_091433_020 Hb_009182_010--Hb_091433_020 Hb_004157_030 Hb_004157_030 Hb_009182_010--Hb_004157_030 Hb_033153_060 Hb_033153_060 Hb_006541_010--Hb_033153_060 Hb_001616_040 Hb_001616_040 Hb_006541_010--Hb_001616_040 Hb_004459_040 Hb_004459_040 Hb_006541_010--Hb_004459_040 Hb_007576_170 Hb_007576_170 Hb_006541_010--Hb_007576_170 Hb_011644_030 Hb_011644_030 Hb_006541_010--Hb_011644_030 Hb_006816_530 Hb_006816_530 Hb_001814_050--Hb_006816_530 Hb_004375_100 Hb_004375_100 Hb_001814_050--Hb_004375_100 Hb_001814_050--Hb_004157_030 Hb_009793_010 Hb_009793_010 Hb_001814_050--Hb_009793_010 Hb_002043_130 Hb_002043_130 Hb_001814_050--Hb_002043_130 Hb_001505_020 Hb_001505_020 Hb_001814_050--Hb_001505_020 Hb_007012_060--Hb_143766_010 Hb_094608_010 Hb_094608_010 Hb_007012_060--Hb_094608_010 Hb_007012_060--Hb_000102_020 Hb_005181_030 Hb_005181_030 Hb_007012_060--Hb_005181_030 Hb_002830_020 Hb_002830_020 Hb_007012_060--Hb_002830_020 Hb_004032_010 Hb_004032_010 Hb_000656_170--Hb_004032_010 Hb_003108_020 Hb_003108_020 Hb_000656_170--Hb_003108_020 Hb_000656_170--Hb_009051_030 Hb_000479_190 Hb_000479_190 Hb_000656_170--Hb_000479_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.6529 27.745 55.4253 70.7665 40.8333 90.3725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
113.516 184.174 111.349 72.5889 35.9015

CAGE analysis