Hb_004109_340

Information

Type transcription factor
Description TF Family: C3H
Location Contig4109: 329739-335011
Sequence    

Annotation

kegg
ID pop:POPTR_0001s05070g
description POPTRDRAFT_829302; hypothetical protein
nr
ID XP_012088179.1
description PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
swissprot
ID Q7F8R0
description Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=Os02g0194200 PE=2 SV=1
trembl
ID A0A067JK64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26709 PE=4 SV=1
Gene Ontology
ID GO:0003723
description zinc finger ccch domain-containing protein 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40675: 329757-335275 , PASA_asmbl_40677: 333797-334054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_340 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
2 Hb_002042_150 0.0645536082 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
3 Hb_000136_260 0.0730077341 - - 40S ribosomal protein S5A [Hevea brasiliensis]
4 Hb_011628_060 0.0736043005 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
5 Hb_023001_040 0.0756273921 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
6 Hb_161574_020 0.0837921064 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
7 Hb_001189_070 0.0844442335 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
8 Hb_005588_060 0.0846132905 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
9 Hb_004586_420 0.0847038801 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
10 Hb_000312_080 0.0859233905 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
11 Hb_011344_120 0.0862705896 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
12 Hb_045003_010 0.0864793394 - - Stomatin-1, putative [Ricinus communis]
13 Hb_186982_040 0.0877383037 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
14 Hb_000946_090 0.0878021479 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
15 Hb_004108_220 0.0880308459 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
16 Hb_000419_020 0.0884041303 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000136_350 0.0890995575 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
18 Hb_000783_010 0.0916210517 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
19 Hb_172632_100 0.0926858041 - - PREDICTED: reticulon-like protein B22 [Jatropha curcas]
20 Hb_000179_270 0.0932750683 - - hypothetical protein JCGZ_07444 [Jatropha curcas]

Gene co-expression network

sample Hb_004109_340 Hb_004109_340 Hb_002042_150 Hb_002042_150 Hb_004109_340--Hb_002042_150 Hb_000136_260 Hb_000136_260 Hb_004109_340--Hb_000136_260 Hb_011628_060 Hb_011628_060 Hb_004109_340--Hb_011628_060 Hb_023001_040 Hb_023001_040 Hb_004109_340--Hb_023001_040 Hb_161574_020 Hb_161574_020 Hb_004109_340--Hb_161574_020 Hb_001189_070 Hb_001189_070 Hb_004109_340--Hb_001189_070 Hb_045003_010 Hb_045003_010 Hb_002042_150--Hb_045003_010 Hb_000179_270 Hb_000179_270 Hb_002042_150--Hb_000179_270 Hb_000384_070 Hb_000384_070 Hb_002042_150--Hb_000384_070 Hb_011344_120 Hb_011344_120 Hb_002042_150--Hb_011344_120 Hb_004108_220 Hb_004108_220 Hb_002042_150--Hb_004108_220 Hb_000538_120 Hb_000538_120 Hb_000136_260--Hb_000538_120 Hb_002078_140 Hb_002078_140 Hb_000136_260--Hb_002078_140 Hb_000099_150 Hb_000099_150 Hb_000136_260--Hb_000099_150 Hb_000419_020 Hb_000419_020 Hb_000136_260--Hb_000419_020 Hb_000136_350 Hb_000136_350 Hb_000136_260--Hb_000136_350 Hb_172632_100 Hb_172632_100 Hb_011628_060--Hb_172632_100 Hb_000783_010 Hb_000783_010 Hb_011628_060--Hb_000783_010 Hb_003528_030 Hb_003528_030 Hb_011628_060--Hb_003528_030 Hb_008616_050 Hb_008616_050 Hb_011628_060--Hb_008616_050 Hb_000200_020 Hb_000200_020 Hb_011628_060--Hb_000200_020 Hb_003058_120 Hb_003058_120 Hb_023001_040--Hb_003058_120 Hb_149985_010 Hb_149985_010 Hb_023001_040--Hb_149985_010 Hb_005588_060 Hb_005588_060 Hb_023001_040--Hb_005588_060 Hb_000663_060 Hb_000663_060 Hb_023001_040--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_023001_040--Hb_001828_180 Hb_000167_010 Hb_000167_010 Hb_023001_040--Hb_000167_010 Hb_007878_010 Hb_007878_010 Hb_161574_020--Hb_007878_010 Hb_000270_310 Hb_000270_310 Hb_161574_020--Hb_000270_310 Hb_002171_060 Hb_002171_060 Hb_161574_020--Hb_002171_060 Hb_002641_060 Hb_002641_060 Hb_161574_020--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_161574_020--Hb_013575_010 Hb_001278_100 Hb_001278_100 Hb_161574_020--Hb_001278_100 Hb_008841_020 Hb_008841_020 Hb_001189_070--Hb_008841_020 Hb_000310_090 Hb_000310_090 Hb_001189_070--Hb_000310_090 Hb_000347_240 Hb_000347_240 Hb_001189_070--Hb_000347_240 Hb_031862_100 Hb_031862_100 Hb_001189_070--Hb_031862_100 Hb_001189_070--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_001189_070--Hb_001314_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.92264 7.24082 12.711 19.6677 7.43188 10.561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0747 23.0919 9.23838 17.617 9.7703

CAGE analysis