Hb_001373_060

Information

Type -
Description -
Location Contig1373: 34576-37725
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26780g
description POPTRDRAFT_797736; hypothetical protein
nr
ID XP_012065640.1
description PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]
swissprot
ID B6JY16
description Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=slx1 PE=3 SV=1
trembl
ID A0A067L8P6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10303: 34550-37729
cDNA
(Sanger)
(ID:Location)		 005_E03.ab1: 34806-37729

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001373_060 0.0 - - PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]
2 Hb_003633_060 0.07785358 - - translationally controlled tumor protein [Hevea brasiliensis]
3 Hb_003494_050 0.0781308997 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
4 Hb_004057_010 0.0952219191 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
5 Hb_000005_300 0.0965913335 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006198_070 0.1028339838 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
7 Hb_001431_080 0.1029746822 - - 40S ribosomal protein S11, putative [Ricinus communis]
8 Hb_000735_090 0.1080792712 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
9 Hb_002798_020 0.1088319145 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
10 Hb_001718_030 0.1090479161 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
11 Hb_000676_160 0.1092404075 - - folate carrier protein, putative [Ricinus communis]
12 Hb_005269_080 0.1092604065 - - protein with unknown function [Ricinus communis]
13 Hb_002811_170 0.114075535 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
14 Hb_000215_330 0.1141895973 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
15 Hb_015299_030 0.1147568568 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
16 Hb_001188_030 0.1148835751 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
17 Hb_011236_010 0.114907287 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
18 Hb_000155_160 0.1155812766 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
19 Hb_005306_070 0.1156713703 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
20 Hb_007747_050 0.1160340963 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]

Gene co-expression network

sample Hb_001373_060 Hb_001373_060 Hb_003633_060 Hb_003633_060 Hb_001373_060--Hb_003633_060 Hb_003494_050 Hb_003494_050 Hb_001373_060--Hb_003494_050 Hb_004057_010 Hb_004057_010 Hb_001373_060--Hb_004057_010 Hb_000005_300 Hb_000005_300 Hb_001373_060--Hb_000005_300 Hb_006198_070 Hb_006198_070 Hb_001373_060--Hb_006198_070 Hb_001431_080 Hb_001431_080 Hb_001373_060--Hb_001431_080 Hb_179296_010 Hb_179296_010 Hb_003633_060--Hb_179296_010 Hb_000320_330 Hb_000320_330 Hb_003633_060--Hb_000320_330 Hb_003633_060--Hb_004057_010 Hb_000567_410 Hb_000567_410 Hb_003633_060--Hb_000567_410 Hb_001512_080 Hb_001512_080 Hb_003633_060--Hb_001512_080 Hb_000735_090 Hb_000735_090 Hb_003494_050--Hb_000735_090 Hb_007747_050 Hb_007747_050 Hb_003494_050--Hb_007747_050 Hb_006573_020 Hb_006573_020 Hb_003494_050--Hb_006573_020 Hb_005269_080 Hb_005269_080 Hb_003494_050--Hb_005269_080 Hb_002811_170 Hb_002811_170 Hb_003494_050--Hb_002811_170 Hb_026053_020 Hb_026053_020 Hb_004057_010--Hb_026053_020 Hb_000676_390 Hb_000676_390 Hb_004057_010--Hb_000676_390 Hb_018133_020 Hb_018133_020 Hb_004057_010--Hb_018133_020 Hb_001726_040 Hb_001726_040 Hb_004057_010--Hb_001726_040 Hb_004057_010--Hb_006198_070 Hb_001329_150 Hb_001329_150 Hb_004057_010--Hb_001329_150 Hb_012022_140 Hb_012022_140 Hb_000005_300--Hb_012022_140 Hb_001252_220 Hb_001252_220 Hb_000005_300--Hb_001252_220 Hb_001979_020 Hb_001979_020 Hb_000005_300--Hb_001979_020 Hb_000215_330 Hb_000215_330 Hb_000005_300--Hb_000215_330 Hb_000739_140 Hb_000739_140 Hb_000005_300--Hb_000739_140 Hb_005843_140 Hb_005843_140 Hb_006198_070--Hb_005843_140 Hb_026527_050 Hb_026527_050 Hb_006198_070--Hb_026527_050 Hb_003669_020 Hb_003669_020 Hb_006198_070--Hb_003669_020 Hb_003540_240 Hb_003540_240 Hb_006198_070--Hb_003540_240 Hb_006355_040 Hb_006355_040 Hb_006198_070--Hb_006355_040 Hb_001188_030 Hb_001188_030 Hb_001431_080--Hb_001188_030 Hb_001718_030 Hb_001718_030 Hb_001431_080--Hb_001718_030 Hb_015299_030 Hb_015299_030 Hb_001431_080--Hb_015299_030 Hb_132840_140 Hb_132840_140 Hb_001431_080--Hb_132840_140 Hb_000676_310 Hb_000676_310 Hb_001431_080--Hb_000676_310 Hb_001431_080--Hb_000676_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.18841 3.01018 9.89742 9.32444 3.77933 7.43918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.32236 29.2898 9.22446 5.56668 9.06143

CAGE analysis