Hb_000320_330

Information

Type -
Description -
Location Contig320: 240222-241797
Sequence    

Annotation

kegg
ID gmx:100527884
description uncharacterized LOC100527884
nr
ID NP_001235145.1
description uncharacterized protein LOC100527884 [Glycine max]
swissprot
ID Q6Z1D5
description Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1
trembl
ID A0A0B2S2C9
description Autophagy-related protein OS=Glycine soja GN=glysoja_015253 PE=3 SV=1
Gene Ontology
ID GO:0006914
description autophagy-related protein 8c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33815: 240138-242695 , PASA_asmbl_33816: 240881-241256 , PASA_asmbl_33817: 241392-241570 , PASA_asmbl_33818: 242122-242352
cDNA
(Sanger)
(ID:Location)		 020_E09.ab1: 240236-242695

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_330 0.0 - - uncharacterized protein LOC100527884 [Glycine max]
2 Hb_000436_030 0.0711158882 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000384_120 0.0851027833 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
4 Hb_003633_060 0.0882513223 - - translationally controlled tumor protein [Hevea brasiliensis]
5 Hb_000479_160 0.08846665 - - Membrane-anchored ubiquitin-fold protein 1 precursor isoform 2 [Theobroma cacao]
6 Hb_001172_100 0.0915951689 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
7 Hb_011485_020 0.0919587675 - - protein with unknown function [Ricinus communis]
8 Hb_002324_010 0.0964924394 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
9 Hb_005269_080 0.0991928814 - - protein with unknown function [Ricinus communis]
10 Hb_068056_030 0.1048532686 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
11 Hb_005278_040 0.1070963233 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
12 Hb_000292_060 0.1089379782 - - transporter, putative [Ricinus communis]
13 Hb_072922_020 0.1091484644 - - SNARE-like superfamily protein [Theobroma cacao]
14 Hb_000483_390 0.1143561234 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
15 Hb_000417_260 0.1147928701 - - protein with unknown function [Ricinus communis]
16 Hb_000056_250 0.1149354964 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
17 Hb_000318_160 0.1153817716 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
18 Hb_007037_020 0.1160490845 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
19 Hb_001157_080 0.1167677226 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000254_050 0.1169523769 - - hypothetical protein VITISV_010510 [Vitis vinifera]

Gene co-expression network

sample Hb_000320_330 Hb_000320_330 Hb_000436_030 Hb_000436_030 Hb_000320_330--Hb_000436_030 Hb_000384_120 Hb_000384_120 Hb_000320_330--Hb_000384_120 Hb_003633_060 Hb_003633_060 Hb_000320_330--Hb_003633_060 Hb_000479_160 Hb_000479_160 Hb_000320_330--Hb_000479_160 Hb_001172_100 Hb_001172_100 Hb_000320_330--Hb_001172_100 Hb_011485_020 Hb_011485_020 Hb_000320_330--Hb_011485_020 Hb_000436_030--Hb_011485_020 Hb_000436_030--Hb_000479_160 Hb_000292_060 Hb_000292_060 Hb_000436_030--Hb_000292_060 Hb_001329_150 Hb_001329_150 Hb_000436_030--Hb_001329_150 Hb_005269_080 Hb_005269_080 Hb_000436_030--Hb_005269_080 Hb_072922_020 Hb_072922_020 Hb_000384_120--Hb_072922_020 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_000384_120--Hb_005269_080 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010 Hb_001373_060 Hb_001373_060 Hb_003633_060--Hb_001373_060 Hb_179296_010 Hb_179296_010 Hb_003633_060--Hb_179296_010 Hb_004057_010 Hb_004057_010 Hb_003633_060--Hb_004057_010 Hb_000567_410 Hb_000567_410 Hb_003633_060--Hb_000567_410 Hb_001512_080 Hb_001512_080 Hb_003633_060--Hb_001512_080 Hb_000479_160--Hb_011485_020 Hb_000111_450 Hb_000111_450 Hb_000479_160--Hb_000111_450 Hb_000483_390 Hb_000483_390 Hb_000479_160--Hb_000483_390 Hb_000638_170 Hb_000638_170 Hb_000479_160--Hb_000638_170 Hb_138585_040 Hb_138585_040 Hb_001172_100--Hb_138585_040 Hb_001172_100--Hb_000384_120 Hb_001172_100--Hb_002324_010 Hb_001225_010 Hb_001225_010 Hb_001172_100--Hb_001225_010 Hb_005045_070 Hb_005045_070 Hb_001172_100--Hb_005045_070 Hb_001157_080 Hb_001157_080 Hb_001172_100--Hb_001157_080 Hb_013405_140 Hb_013405_140 Hb_011485_020--Hb_013405_140 Hb_002016_080 Hb_002016_080 Hb_011485_020--Hb_002016_080 Hb_001053_140 Hb_001053_140 Hb_011485_020--Hb_001053_140 Hb_007037_020 Hb_007037_020 Hb_011485_020--Hb_007037_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.35602 6.95588 16.5877 31.7085 6.24949 14.8286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.2945 80.8115 46.6662 13.6582 24.6838

CAGE analysis