Hb_000479_160

Information

Type -
Description -
Location Contig479: 108971-115088
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12640g
description POPTRDRAFT_808962; hypothetical protein
nr
ID XP_007032680.1
description Membrane-anchored ubiquitin-fold protein 1 precursor isoform 2 [Theobroma cacao]
swissprot
ID Q8LCS8
description Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana GN=MUB2 PE=1 SV=1
trembl
ID A0A061EFA4
description Membrane-anchored ubiquitin-fold protein 1 isoform 2 OS=Theobroma cacao GN=TCM_018705 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44619: 109080-115065 , PASA_asmbl_44620: 109082-115065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_160 0.0 - - Membrane-anchored ubiquitin-fold protein 1 precursor isoform 2 [Theobroma cacao]
2 Hb_011485_020 0.0723008218 - - protein with unknown function [Ricinus communis]
3 Hb_000436_030 0.0780953165 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000320_330 0.08846665 - - uncharacterized protein LOC100527884 [Glycine max]
5 Hb_000111_450 0.0956793546 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
6 Hb_000483_390 0.10361625 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
7 Hb_000638_170 0.1042827759 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
8 Hb_002742_090 0.104702331 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
9 Hb_005269_080 0.1055025902 - - protein with unknown function [Ricinus communis]
10 Hb_001053_140 0.114072135 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
11 Hb_001776_160 0.1141421331 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
12 Hb_002110_200 0.1147494363 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000254_050 0.1154880695 - - hypothetical protein VITISV_010510 [Vitis vinifera]
14 Hb_068056_030 0.1170491425 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
15 Hb_000453_120 0.1179694458 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
16 Hb_013405_140 0.117978466 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
17 Hb_002324_010 0.1182961882 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
18 Hb_000419_070 0.1190105383 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
19 Hb_003633_060 0.1196087124 - - translationally controlled tumor protein [Hevea brasiliensis]
20 Hb_000292_060 0.1200832662 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000479_160 Hb_000479_160 Hb_011485_020 Hb_011485_020 Hb_000479_160--Hb_011485_020 Hb_000436_030 Hb_000436_030 Hb_000479_160--Hb_000436_030 Hb_000320_330 Hb_000320_330 Hb_000479_160--Hb_000320_330 Hb_000111_450 Hb_000111_450 Hb_000479_160--Hb_000111_450 Hb_000483_390 Hb_000483_390 Hb_000479_160--Hb_000483_390 Hb_000638_170 Hb_000638_170 Hb_000479_160--Hb_000638_170 Hb_013405_140 Hb_013405_140 Hb_011485_020--Hb_013405_140 Hb_011485_020--Hb_000436_030 Hb_002016_080 Hb_002016_080 Hb_011485_020--Hb_002016_080 Hb_001053_140 Hb_001053_140 Hb_011485_020--Hb_001053_140 Hb_007037_020 Hb_007037_020 Hb_011485_020--Hb_007037_020 Hb_000436_030--Hb_000320_330 Hb_000292_060 Hb_000292_060 Hb_000436_030--Hb_000292_060 Hb_001329_150 Hb_001329_150 Hb_000436_030--Hb_001329_150 Hb_005269_080 Hb_005269_080 Hb_000436_030--Hb_005269_080 Hb_000384_120 Hb_000384_120 Hb_000320_330--Hb_000384_120 Hb_003633_060 Hb_003633_060 Hb_000320_330--Hb_003633_060 Hb_001172_100 Hb_001172_100 Hb_000320_330--Hb_001172_100 Hb_000320_330--Hb_011485_020 Hb_000111_450--Hb_013405_140 Hb_000111_450--Hb_011485_020 Hb_002284_200 Hb_002284_200 Hb_000111_450--Hb_002284_200 Hb_003994_190 Hb_003994_190 Hb_000111_450--Hb_003994_190 Hb_001776_160 Hb_001776_160 Hb_000111_450--Hb_001776_160 Hb_114310_080 Hb_114310_080 Hb_000483_390--Hb_114310_080 Hb_003414_050 Hb_003414_050 Hb_000483_390--Hb_003414_050 Hb_000483_390--Hb_000638_170 Hb_011381_080 Hb_011381_080 Hb_000483_390--Hb_011381_080 Hb_003671_020 Hb_003671_020 Hb_000483_390--Hb_003671_020 Hb_028515_010 Hb_028515_010 Hb_000483_390--Hb_028515_010 Hb_009486_020 Hb_009486_020 Hb_000638_170--Hb_009486_020 Hb_002303_060 Hb_002303_060 Hb_000638_170--Hb_002303_060 Hb_000336_240 Hb_000336_240 Hb_000638_170--Hb_000336_240 Hb_000638_170--Hb_114310_080 Hb_000805_240 Hb_000805_240 Hb_000638_170--Hb_000805_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.23827 3.10046 8.91415 15.4313 4.32863 6.23342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6174 33.923 25.0905 7.43523 9.13842

CAGE analysis