Hb_002284_200

Information

Type -
Description -
Location Contig2284: 147660-150110
Sequence    

Annotation

kegg
ID rcu:RCOM_1601680
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012073619.1
description PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
swissprot
ID P93006
description Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana GN=At2g33700 PE=2 SV=1
trembl
ID A0A067KP66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08059 PE=3 SV=1
Gene Ontology
ID GO:0005634
description probable protein phosphatase 2c 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23811: 147019-150260 , PASA_asmbl_23812: 147224-150403
cDNA
(Sanger)
(ID:Location)		 009_M12.ab1: 147019-148933

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_200 0.0 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
2 Hb_019263_020 0.0705429493 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
3 Hb_000748_130 0.0851646052 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
4 Hb_001279_340 0.0897662521 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
5 Hb_000563_250 0.0908164073 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
6 Hb_000111_450 0.0919980175 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
7 Hb_000366_090 0.0967196233 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
8 Hb_005545_100 0.0983271027 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
9 Hb_000086_280 0.0984011729 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
10 Hb_001776_160 0.0986610251 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
11 Hb_028515_010 0.0988394989 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
12 Hb_013399_050 0.0988401618 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
13 Hb_000120_960 0.0998682686 - - isocitrate dehydrogenase, putative [Ricinus communis]
14 Hb_007037_020 0.1010833121 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
15 Hb_000117_090 0.1033178214 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
16 Hb_010407_180 0.1035226127 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
17 Hb_005928_100 0.1047638231 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
18 Hb_002660_070 0.1052702066 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
19 Hb_002742_090 0.1054068821 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
20 Hb_013405_140 0.1061819475 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]

Gene co-expression network

sample Hb_002284_200 Hb_002284_200 Hb_019263_020 Hb_019263_020 Hb_002284_200--Hb_019263_020 Hb_000748_130 Hb_000748_130 Hb_002284_200--Hb_000748_130 Hb_001279_340 Hb_001279_340 Hb_002284_200--Hb_001279_340 Hb_000563_250 Hb_000563_250 Hb_002284_200--Hb_000563_250 Hb_000111_450 Hb_000111_450 Hb_002284_200--Hb_000111_450 Hb_000366_090 Hb_000366_090 Hb_002284_200--Hb_000366_090 Hb_013607_040 Hb_013607_040 Hb_019263_020--Hb_013607_040 Hb_002235_280 Hb_002235_280 Hb_019263_020--Hb_002235_280 Hb_003053_020 Hb_003053_020 Hb_019263_020--Hb_003053_020 Hb_011534_030 Hb_011534_030 Hb_019263_020--Hb_011534_030 Hb_000373_130 Hb_000373_130 Hb_019263_020--Hb_000373_130 Hb_012760_070 Hb_012760_070 Hb_000748_130--Hb_012760_070 Hb_148113_010 Hb_148113_010 Hb_000748_130--Hb_148113_010 Hb_010608_050 Hb_010608_050 Hb_000748_130--Hb_010608_050 Hb_001959_190 Hb_001959_190 Hb_000748_130--Hb_001959_190 Hb_004607_030 Hb_004607_030 Hb_000748_130--Hb_004607_030 Hb_006831_120 Hb_006831_120 Hb_001279_340--Hb_006831_120 Hb_002660_070 Hb_002660_070 Hb_001279_340--Hb_002660_070 Hb_000120_960 Hb_000120_960 Hb_001279_340--Hb_000120_960 Hb_010407_180 Hb_010407_180 Hb_001279_340--Hb_010407_180 Hb_001545_100 Hb_001545_100 Hb_001279_340--Hb_001545_100 Hb_001616_030 Hb_001616_030 Hb_000563_250--Hb_001616_030 Hb_000120_680 Hb_000120_680 Hb_000563_250--Hb_000120_680 Hb_000240_090 Hb_000240_090 Hb_000563_250--Hb_000240_090 Hb_021409_030 Hb_021409_030 Hb_000563_250--Hb_021409_030 Hb_000086_280 Hb_000086_280 Hb_000563_250--Hb_000086_280 Hb_021409_160 Hb_021409_160 Hb_000563_250--Hb_021409_160 Hb_013405_140 Hb_013405_140 Hb_000111_450--Hb_013405_140 Hb_011485_020 Hb_011485_020 Hb_000111_450--Hb_011485_020 Hb_000479_160 Hb_000479_160 Hb_000111_450--Hb_000479_160 Hb_003994_190 Hb_003994_190 Hb_000111_450--Hb_003994_190 Hb_001776_160 Hb_001776_160 Hb_000111_450--Hb_001776_160 Hb_168319_030 Hb_168319_030 Hb_000366_090--Hb_168319_030 Hb_000033_020 Hb_000033_020 Hb_000366_090--Hb_000033_020 Hb_000117_090 Hb_000117_090 Hb_000366_090--Hb_000117_090 Hb_000019_060 Hb_000019_060 Hb_000366_090--Hb_000019_060 Hb_000110_320 Hb_000110_320 Hb_000366_090--Hb_000110_320 Hb_004375_150 Hb_004375_150 Hb_000366_090--Hb_004375_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.75322 9.83558 11.239 10.5072 5.99586 10.5972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0338 35.2857 38.3868 9.37783 11.8073

CAGE analysis