Hb_000748_130

Information

Type -
Description -
Location Contig748: 168360-170354
Sequence    

Annotation

kegg
ID tcc:TCM_001836
description BED zinc finger,hAT family dimerization domain
nr
ID XP_012066533.1
description PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q6AVI0
description Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica GN=Os03g0733400 PE=2 SV=1
trembl
ID A0A067L2L1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00166 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc finger bed domain-containing protein ricesleeper 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56753: 168244-170867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000748_130 0.0 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
2 Hb_002284_200 0.0851646052 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
3 Hb_012760_070 0.0958034849 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_148113_010 0.0967350785 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
5 Hb_010608_050 0.0972555162 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
6 Hb_001959_190 0.0984010645 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
7 Hb_004607_030 0.0987101571 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
8 Hb_002027_040 0.1005591314 - - synapse-associated protein, putative [Ricinus communis]
9 Hb_019263_020 0.1009765484 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
10 Hb_009803_050 0.1013551581 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
11 Hb_028515_010 0.1032367536 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
12 Hb_000007_140 0.1047008851 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
13 Hb_000367_260 0.1060864733 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
14 Hb_004837_160 0.106442556 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
15 Hb_005545_100 0.1068916734 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
16 Hb_005488_200 0.1072330828 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
17 Hb_000373_130 0.1076597091 - - PREDICTED: protein FAM188A [Jatropha curcas]
18 Hb_013607_040 0.1080480756 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
19 Hb_001504_330 0.10892452 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
20 Hb_009339_030 0.1092474006 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]

Gene co-expression network

sample Hb_000748_130 Hb_000748_130 Hb_002284_200 Hb_002284_200 Hb_000748_130--Hb_002284_200 Hb_012760_070 Hb_012760_070 Hb_000748_130--Hb_012760_070 Hb_148113_010 Hb_148113_010 Hb_000748_130--Hb_148113_010 Hb_010608_050 Hb_010608_050 Hb_000748_130--Hb_010608_050 Hb_001959_190 Hb_001959_190 Hb_000748_130--Hb_001959_190 Hb_004607_030 Hb_004607_030 Hb_000748_130--Hb_004607_030 Hb_019263_020 Hb_019263_020 Hb_002284_200--Hb_019263_020 Hb_001279_340 Hb_001279_340 Hb_002284_200--Hb_001279_340 Hb_000563_250 Hb_000563_250 Hb_002284_200--Hb_000563_250 Hb_000111_450 Hb_000111_450 Hb_002284_200--Hb_000111_450 Hb_000366_090 Hb_000366_090 Hb_002284_200--Hb_000366_090 Hb_010812_120 Hb_010812_120 Hb_012760_070--Hb_010812_120 Hb_000016_160 Hb_000016_160 Hb_012760_070--Hb_000016_160 Hb_008772_010 Hb_008772_010 Hb_012760_070--Hb_008772_010 Hb_028515_010 Hb_028515_010 Hb_012760_070--Hb_028515_010 Hb_000175_060 Hb_000175_060 Hb_012760_070--Hb_000175_060 Hb_005488_200 Hb_005488_200 Hb_148113_010--Hb_005488_200 Hb_000023_090 Hb_000023_090 Hb_148113_010--Hb_000023_090 Hb_000072_180 Hb_000072_180 Hb_148113_010--Hb_000072_180 Hb_000046_350 Hb_000046_350 Hb_148113_010--Hb_000046_350 Hb_148113_010--Hb_028515_010 Hb_000120_020 Hb_000120_020 Hb_148113_010--Hb_000120_020 Hb_008695_100 Hb_008695_100 Hb_010608_050--Hb_008695_100 Hb_010608_050--Hb_004607_030 Hb_011030_020 Hb_011030_020 Hb_010608_050--Hb_011030_020 Hb_000617_150 Hb_000617_150 Hb_010608_050--Hb_000617_150 Hb_001699_130 Hb_001699_130 Hb_010608_050--Hb_001699_130 Hb_011534_030 Hb_011534_030 Hb_010608_050--Hb_011534_030 Hb_020805_130 Hb_020805_130 Hb_001959_190--Hb_020805_130 Hb_001959_190--Hb_004607_030 Hb_001014_030 Hb_001014_030 Hb_001959_190--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_001959_190--Hb_003371_090 Hb_009803_050 Hb_009803_050 Hb_001959_190--Hb_009803_050 Hb_001507_040 Hb_001507_040 Hb_001959_190--Hb_001507_040 Hb_000696_040 Hb_000696_040 Hb_004607_030--Hb_000696_040 Hb_000567_120 Hb_000567_120 Hb_004607_030--Hb_000567_120 Hb_004607_030--Hb_008695_100 Hb_025557_030 Hb_025557_030 Hb_004607_030--Hb_025557_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.28202 9.59535 6.49114 12.9034 5.44042 8.97064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9987 24.057 33.5624 9.38696 10.6868

CAGE analysis