Hb_012760_070

Information

Type -
Description -
Location Contig12760: 38258-43167
Sequence    

Annotation

kegg
ID rcu:RCOM_0782470
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002530628.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q5Z8P0
description Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1
trembl
ID B9SXA9
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0782470 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 46

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08417: 38139-42952
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012760_070 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_010812_120 0.0934088778 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
3 Hb_000016_160 0.0944652061 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
4 Hb_008772_010 0.0948432095 - - conserved hypothetical protein [Ricinus communis]
5 Hb_028515_010 0.0953490645 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
6 Hb_000748_130 0.0958034849 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
7 Hb_000175_060 0.0985762994 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
8 Hb_008566_050 0.0989861923 - - phosphoglycerate mutase, putative [Ricinus communis]
9 Hb_004705_080 0.0999703026 transcription factor TF Family: ARF transcription factor, putative [Ricinus communis]
10 Hb_003349_090 0.1024940158 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
11 Hb_004375_150 0.1067225759 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
12 Hb_002878_020 0.1068672401 - - mitochondrial carrier protein, putative [Ricinus communis]
13 Hb_000215_060 0.1075963602 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
14 Hb_005568_120 0.1085869 - - Prephenate dehydratase [Hevea brasiliensis]
15 Hb_004607_030 0.1097798665 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
16 Hb_011173_050 0.110060249 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
17 Hb_002284_200 0.111399537 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
18 Hb_000424_200 0.113619264 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
19 Hb_000117_090 0.1140754439 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
20 Hb_004837_160 0.114290451 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012760_070 Hb_012760_070 Hb_010812_120 Hb_010812_120 Hb_012760_070--Hb_010812_120 Hb_000016_160 Hb_000016_160 Hb_012760_070--Hb_000016_160 Hb_008772_010 Hb_008772_010 Hb_012760_070--Hb_008772_010 Hb_028515_010 Hb_028515_010 Hb_012760_070--Hb_028515_010 Hb_000748_130 Hb_000748_130 Hb_012760_070--Hb_000748_130 Hb_000175_060 Hb_000175_060 Hb_012760_070--Hb_000175_060 Hb_003349_090 Hb_003349_090 Hb_010812_120--Hb_003349_090 Hb_001633_210 Hb_001633_210 Hb_010812_120--Hb_001633_210 Hb_089032_030 Hb_089032_030 Hb_010812_120--Hb_089032_030 Hb_000250_060 Hb_000250_060 Hb_010812_120--Hb_000250_060 Hb_010812_120--Hb_000016_160 Hb_003994_260 Hb_003994_260 Hb_010812_120--Hb_003994_260 Hb_004102_110 Hb_004102_110 Hb_000016_160--Hb_004102_110 Hb_000016_160--Hb_028515_010 Hb_003697_040 Hb_003697_040 Hb_000016_160--Hb_003697_040 Hb_003605_090 Hb_003605_090 Hb_000016_160--Hb_003605_090 Hb_000120_020 Hb_000120_020 Hb_000016_160--Hb_000120_020 Hb_006478_160 Hb_006478_160 Hb_008772_010--Hb_006478_160 Hb_150196_010 Hb_150196_010 Hb_008772_010--Hb_150196_010 Hb_000215_060 Hb_000215_060 Hb_008772_010--Hb_000215_060 Hb_000115_230 Hb_000115_230 Hb_008772_010--Hb_000115_230 Hb_000450_130 Hb_000450_130 Hb_008772_010--Hb_000450_130 Hb_005568_120 Hb_005568_120 Hb_028515_010--Hb_005568_120 Hb_004837_160 Hb_004837_160 Hb_028515_010--Hb_004837_160 Hb_000373_130 Hb_000373_130 Hb_028515_010--Hb_000373_130 Hb_028515_010--Hb_003349_090 Hb_114310_080 Hb_114310_080 Hb_028515_010--Hb_114310_080 Hb_000985_060 Hb_000985_060 Hb_028515_010--Hb_000985_060 Hb_002284_200 Hb_002284_200 Hb_000748_130--Hb_002284_200 Hb_148113_010 Hb_148113_010 Hb_000748_130--Hb_148113_010 Hb_010608_050 Hb_010608_050 Hb_000748_130--Hb_010608_050 Hb_001959_190 Hb_001959_190 Hb_000748_130--Hb_001959_190 Hb_004607_030 Hb_004607_030 Hb_000748_130--Hb_004607_030 Hb_011173_050 Hb_011173_050 Hb_000175_060--Hb_011173_050 Hb_000175_060--Hb_000215_060 Hb_000086_280 Hb_000086_280 Hb_000175_060--Hb_000086_280 Hb_004586_320 Hb_004586_320 Hb_000175_060--Hb_004586_320 Hb_000175_060--Hb_005568_120 Hb_005883_100 Hb_005883_100 Hb_000175_060--Hb_005883_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.04305 17.2425 10.3854 17.9775 9.88074 14.0499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9353 44.9855 38.0088 16.8341 9.42921

CAGE analysis