Hb_001959_190

Information

Type transcription factor
Description TF Family: SET
Location Contig1959: 164655-166673
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07480g
description POPTRDRAFT_229952; hypothetical protein
nr
ID XP_012077634.1
description PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
swissprot
ID Q9T0G7
description Histone-lysine N-methyltransferase family member SUVH9 OS=Arabidopsis thaliana GN=SUVH9 PE=1 SV=1
trembl
ID A0A067KB37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12891 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase family member suvh9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19637: 164765-169160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_190 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
2 Hb_020805_130 0.0577310284 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_004607_030 0.0603640814 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
4 Hb_001014_030 0.0732380866 - - ATP binding protein, putative [Ricinus communis]
5 Hb_003371_090 0.0753262948 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
6 Hb_009803_050 0.0757610468 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
7 Hb_001507_040 0.0806242103 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002878_020 0.0807791807 - - mitochondrial carrier protein, putative [Ricinus communis]
9 Hb_001633_210 0.0808805722 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
10 Hb_012325_020 0.0829122678 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
11 Hb_030565_030 0.0831164114 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
12 Hb_000041_100 0.0835927487 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
13 Hb_000373_130 0.0842329682 - - PREDICTED: protein FAM188A [Jatropha curcas]
14 Hb_000206_240 0.0871686177 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000567_120 0.0873153358 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
16 Hb_000840_250 0.0876694632 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
17 Hb_001318_270 0.0877067365 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
18 Hb_008695_100 0.0886238506 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
19 Hb_000696_040 0.0893331988 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_003053_020 0.0895225655 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_001959_190 Hb_001959_190 Hb_020805_130 Hb_020805_130 Hb_001959_190--Hb_020805_130 Hb_004607_030 Hb_004607_030 Hb_001959_190--Hb_004607_030 Hb_001014_030 Hb_001014_030 Hb_001959_190--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_001959_190--Hb_003371_090 Hb_009803_050 Hb_009803_050 Hb_001959_190--Hb_009803_050 Hb_001507_040 Hb_001507_040 Hb_001959_190--Hb_001507_040 Hb_020805_130--Hb_001507_040 Hb_020805_130--Hb_009803_050 Hb_003053_020 Hb_003053_020 Hb_020805_130--Hb_003053_020 Hb_000603_080 Hb_000603_080 Hb_020805_130--Hb_000603_080 Hb_002027_040 Hb_002027_040 Hb_020805_130--Hb_002027_040 Hb_000696_040 Hb_000696_040 Hb_004607_030--Hb_000696_040 Hb_000567_120 Hb_000567_120 Hb_004607_030--Hb_000567_120 Hb_010608_050 Hb_010608_050 Hb_004607_030--Hb_010608_050 Hb_008695_100 Hb_008695_100 Hb_004607_030--Hb_008695_100 Hb_025557_030 Hb_025557_030 Hb_004607_030--Hb_025557_030 Hb_000003_250 Hb_000003_250 Hb_001014_030--Hb_000003_250 Hb_000840_250 Hb_000840_250 Hb_001014_030--Hb_000840_250 Hb_001633_210 Hb_001633_210 Hb_001014_030--Hb_001633_210 Hb_000614_250 Hb_000614_250 Hb_001014_030--Hb_000614_250 Hb_000297_010 Hb_000297_010 Hb_001014_030--Hb_000297_010 Hb_002450_020 Hb_002450_020 Hb_001014_030--Hb_002450_020 Hb_000041_100 Hb_000041_100 Hb_003371_090--Hb_000041_100 Hb_000213_100 Hb_000213_100 Hb_003371_090--Hb_000213_100 Hb_007508_090 Hb_007508_090 Hb_003371_090--Hb_007508_090 Hb_003371_090--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_003371_090--Hb_000710_060 Hb_003371_090--Hb_000297_010 Hb_009803_050--Hb_000603_080 Hb_002878_020 Hb_002878_020 Hb_009803_050--Hb_002878_020 Hb_005162_060 Hb_005162_060 Hb_009803_050--Hb_005162_060 Hb_005488_200 Hb_005488_200 Hb_009803_050--Hb_005488_200 Hb_008616_070 Hb_008616_070 Hb_001507_040--Hb_008616_070 Hb_002660_070 Hb_002660_070 Hb_001507_040--Hb_002660_070 Hb_000445_040 Hb_000445_040 Hb_001507_040--Hb_000445_040 Hb_000165_160 Hb_000165_160 Hb_001507_040--Hb_000165_160 Hb_006615_020 Hb_006615_020 Hb_001507_040--Hb_006615_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7792 14.6509 6.22767 13.3444 11.1562 12.1732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9904 22.4047 33.9311 13.7641 12.7414

CAGE analysis