Hb_005162_060

Information

Type -
Description -
Location Contig5162: 50584-51567
Sequence    

Annotation

kegg
ID rcu:RCOM_1582550
description Septum site-determining protein minD, putative
nr
ID XP_012090187.1
description PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
swissprot
ID Q9MBA2
description Putative septum site-determining protein minD homolog, chloroplastic OS=Arabidopsis thaliana GN=MIND1 PE=1 SV=1
trembl
ID A0A067JEK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26063 PE=4 SV=1
Gene Ontology
ID GO:0009570
description septum site-determining protein mind chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46510: 50106-51542 , PASA_asmbl_46511: 51559-51658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005162_060 0.0 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
2 Hb_158445_010 0.0679436611 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
3 Hb_000327_060 0.0742983016 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
4 Hb_009803_050 0.0772911744 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
5 Hb_001514_120 0.0797058957 - - hypothetical protein VITISV_015004 [Vitis vinifera]
6 Hb_003038_240 0.0828986042 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000424_200 0.0968248132 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
8 Hb_006198_070 0.0996630203 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
9 Hb_012423_030 0.1002929918 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_002311_360 0.1004362507 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
11 Hb_000310_020 0.1020275839 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
12 Hb_001648_030 0.1026720321 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
13 Hb_000733_180 0.1030213829 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
14 Hb_004143_150 0.1034250938 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
15 Hb_000856_010 0.1038301092 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
16 Hb_004324_090 0.104290031 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
17 Hb_000161_130 0.1043664084 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
18 Hb_163256_020 0.104437034 - - fructokinase [Manihot esculenta]
19 Hb_013399_050 0.1045849189 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
20 Hb_003768_030 0.1054086647 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005162_060 Hb_005162_060 Hb_158445_010 Hb_158445_010 Hb_005162_060--Hb_158445_010 Hb_000327_060 Hb_000327_060 Hb_005162_060--Hb_000327_060 Hb_009803_050 Hb_009803_050 Hb_005162_060--Hb_009803_050 Hb_001514_120 Hb_001514_120 Hb_005162_060--Hb_001514_120 Hb_003038_240 Hb_003038_240 Hb_005162_060--Hb_003038_240 Hb_000424_200 Hb_000424_200 Hb_005162_060--Hb_000424_200 Hb_158445_010--Hb_000327_060 Hb_004324_090 Hb_004324_090 Hb_158445_010--Hb_004324_090 Hb_004143_150 Hb_004143_150 Hb_158445_010--Hb_004143_150 Hb_000310_020 Hb_000310_020 Hb_158445_010--Hb_000310_020 Hb_163256_020 Hb_163256_020 Hb_158445_010--Hb_163256_020 Hb_000327_060--Hb_004143_150 Hb_001545_160 Hb_001545_160 Hb_000327_060--Hb_001545_160 Hb_002676_090 Hb_002676_090 Hb_000327_060--Hb_002676_090 Hb_012423_030 Hb_012423_030 Hb_000327_060--Hb_012423_030 Hb_000603_080 Hb_000603_080 Hb_009803_050--Hb_000603_080 Hb_020805_130 Hb_020805_130 Hb_009803_050--Hb_020805_130 Hb_001959_190 Hb_001959_190 Hb_009803_050--Hb_001959_190 Hb_002878_020 Hb_002878_020 Hb_009803_050--Hb_002878_020 Hb_005488_200 Hb_005488_200 Hb_009803_050--Hb_005488_200 Hb_000288_030 Hb_000288_030 Hb_001514_120--Hb_000288_030 Hb_000928_070 Hb_000928_070 Hb_001514_120--Hb_000928_070 Hb_000856_010 Hb_000856_010 Hb_001514_120--Hb_000856_010 Hb_012022_040 Hb_012022_040 Hb_001514_120--Hb_012022_040 Hb_001541_120 Hb_001541_120 Hb_001514_120--Hb_001541_120 Hb_012114_070 Hb_012114_070 Hb_003038_240--Hb_012114_070 Hb_003124_150 Hb_003124_150 Hb_003038_240--Hb_003124_150 Hb_003038_240--Hb_158445_010 Hb_000729_030 Hb_000729_030 Hb_003038_240--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003038_240--Hb_000336_150 Hb_013399_050 Hb_013399_050 Hb_000424_200--Hb_013399_050 Hb_000424_200--Hb_158445_010 Hb_007037_020 Hb_007037_020 Hb_000424_200--Hb_007037_020 Hb_000424_200--Hb_000327_060 Hb_006355_040 Hb_006355_040 Hb_000424_200--Hb_006355_040 Hb_005843_140 Hb_005843_140 Hb_000424_200--Hb_005843_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8488 21.217 13.5673 19.7717 10.6605 10.8034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8367 48.3523 30.8807 13.8081 28.585

CAGE analysis