Hb_013399_050

Information

Type -
Description -
Location Contig13399: 27863-29707
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17040g
description POPTRDRAFT_829509; hypothetical protein
nr
ID XP_012068898.1
description PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
swissprot
ID Q9SKI2
description Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
trembl
ID A0A067L8C5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24714 PE=4 SV=1
Gene Ontology
ID GO:0007034
description snf7-like partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09567: 27933-29693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013399_050 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
2 Hb_011021_040 0.0607552358 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
3 Hb_000424_200 0.0731127421 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
4 Hb_007037_020 0.0782910688 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
5 Hb_013405_140 0.086626438 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
6 Hb_000327_060 0.0875421101 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
7 Hb_158445_010 0.0915709358 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
8 Hb_000007_140 0.0929609674 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
9 Hb_001172_120 0.0953900189 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
10 Hb_000465_230 0.0968283097 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
11 Hb_002284_200 0.0988401618 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
12 Hb_065525_090 0.0999064397 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
13 Hb_002016_080 0.1015669566 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
14 Hb_005162_060 0.1045849189 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
15 Hb_003783_030 0.106237082 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
16 Hb_011485_020 0.1124163009 - - protein with unknown function [Ricinus communis]
17 Hb_001504_330 0.1129576216 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
18 Hb_007192_100 0.1133313343 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
19 Hb_000175_030 0.1137796385 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
20 Hb_000673_020 0.1152912098 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_013399_050 Hb_013399_050 Hb_011021_040 Hb_011021_040 Hb_013399_050--Hb_011021_040 Hb_000424_200 Hb_000424_200 Hb_013399_050--Hb_000424_200 Hb_007037_020 Hb_007037_020 Hb_013399_050--Hb_007037_020 Hb_013405_140 Hb_013405_140 Hb_013399_050--Hb_013405_140 Hb_000327_060 Hb_000327_060 Hb_013399_050--Hb_000327_060 Hb_158445_010 Hb_158445_010 Hb_013399_050--Hb_158445_010 Hb_011021_040--Hb_007037_020 Hb_011021_040--Hb_013405_140 Hb_000175_030 Hb_000175_030 Hb_011021_040--Hb_000175_030 Hb_002016_080 Hb_002016_080 Hb_011021_040--Hb_002016_080 Hb_001172_120 Hb_001172_120 Hb_011021_040--Hb_001172_120 Hb_000424_200--Hb_158445_010 Hb_000424_200--Hb_007037_020 Hb_000424_200--Hb_000327_060 Hb_006355_040 Hb_006355_040 Hb_000424_200--Hb_006355_040 Hb_005843_140 Hb_005843_140 Hb_000424_200--Hb_005843_140 Hb_007037_020--Hb_013405_140 Hb_007037_020--Hb_001172_120 Hb_007037_020--Hb_002016_080 Hb_011485_020 Hb_011485_020 Hb_007037_020--Hb_011485_020 Hb_013405_140--Hb_002016_080 Hb_013405_140--Hb_011485_020 Hb_000673_020 Hb_000673_020 Hb_013405_140--Hb_000673_020 Hb_003783_030 Hb_003783_030 Hb_013405_140--Hb_003783_030 Hb_000327_060--Hb_158445_010 Hb_004143_150 Hb_004143_150 Hb_000327_060--Hb_004143_150 Hb_001545_160 Hb_001545_160 Hb_000327_060--Hb_001545_160 Hb_005162_060 Hb_005162_060 Hb_000327_060--Hb_005162_060 Hb_002676_090 Hb_002676_090 Hb_000327_060--Hb_002676_090 Hb_012423_030 Hb_012423_030 Hb_000327_060--Hb_012423_030 Hb_004324_090 Hb_004324_090 Hb_158445_010--Hb_004324_090 Hb_158445_010--Hb_005162_060 Hb_158445_010--Hb_004143_150 Hb_000310_020 Hb_000310_020 Hb_158445_010--Hb_000310_020 Hb_163256_020 Hb_163256_020 Hb_158445_010--Hb_163256_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7943 18.1187 15.0511 13.8478 5.66186 6.52194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2486 44.7523 37.8092 13.7186 17.0962

CAGE analysis