Hb_011485_020

Information

Type -
Description -
Location Contig11485: 13730-17149
Sequence    

Annotation

kegg
ID rcu:RCOM_0212790
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002531261.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LFT9
description Ras-related protein RABH1e OS=Arabidopsis thaliana GN=RABH1E PE=2 SV=1
trembl
ID B9SZ42
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0212790 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabh1e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04472: 13806-17141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011485_020 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_013405_140 0.0639779618 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
3 Hb_000436_030 0.068344416 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002016_080 0.069226713 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
5 Hb_000479_160 0.0723008218 - - Membrane-anchored ubiquitin-fold protein 1 precursor isoform 2 [Theobroma cacao]
6 Hb_001053_140 0.0754570565 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
7 Hb_007037_020 0.0830587658 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
8 Hb_005269_080 0.0844528781 - - protein with unknown function [Ricinus communis]
9 Hb_000419_070 0.0876355882 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
10 Hb_000111_450 0.0885011292 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
11 Hb_011021_040 0.0892489349 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
12 Hb_000384_120 0.090487534 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
13 Hb_000320_330 0.0919587675 - - uncharacterized protein LOC100527884 [Glycine max]
14 Hb_000673_020 0.0931699102 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
15 Hb_003880_030 0.0940549104 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
16 Hb_001329_150 0.0940841041 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
17 Hb_000254_050 0.0944128961 - - hypothetical protein VITISV_010510 [Vitis vinifera]
18 Hb_001776_160 0.0960342535 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
19 Hb_001979_020 0.0981674474 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
20 Hb_002742_090 0.0993028915 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]

Gene co-expression network

sample Hb_011485_020 Hb_011485_020 Hb_013405_140 Hb_013405_140 Hb_011485_020--Hb_013405_140 Hb_000436_030 Hb_000436_030 Hb_011485_020--Hb_000436_030 Hb_002016_080 Hb_002016_080 Hb_011485_020--Hb_002016_080 Hb_000479_160 Hb_000479_160 Hb_011485_020--Hb_000479_160 Hb_001053_140 Hb_001053_140 Hb_011485_020--Hb_001053_140 Hb_007037_020 Hb_007037_020 Hb_011485_020--Hb_007037_020 Hb_013405_140--Hb_002016_080 Hb_000673_020 Hb_000673_020 Hb_013405_140--Hb_000673_020 Hb_013405_140--Hb_007037_020 Hb_003783_030 Hb_003783_030 Hb_013405_140--Hb_003783_030 Hb_011021_040 Hb_011021_040 Hb_013405_140--Hb_011021_040 Hb_000320_330 Hb_000320_330 Hb_000436_030--Hb_000320_330 Hb_000436_030--Hb_000479_160 Hb_000292_060 Hb_000292_060 Hb_000436_030--Hb_000292_060 Hb_001329_150 Hb_001329_150 Hb_000436_030--Hb_001329_150 Hb_005269_080 Hb_005269_080 Hb_000436_030--Hb_005269_080 Hb_000922_040 Hb_000922_040 Hb_002016_080--Hb_000922_040 Hb_002016_080--Hb_000673_020 Hb_000413_280 Hb_000413_280 Hb_002016_080--Hb_000413_280 Hb_002016_080--Hb_003783_030 Hb_000479_160--Hb_000320_330 Hb_000111_450 Hb_000111_450 Hb_000479_160--Hb_000111_450 Hb_000483_390 Hb_000483_390 Hb_000479_160--Hb_000483_390 Hb_000638_170 Hb_000638_170 Hb_000479_160--Hb_000638_170 Hb_001053_140--Hb_001329_150 Hb_002303_060 Hb_002303_060 Hb_001053_140--Hb_002303_060 Hb_000419_070 Hb_000419_070 Hb_001053_140--Hb_000419_070 Hb_010560_030 Hb_010560_030 Hb_001053_140--Hb_010560_030 Hb_000189_240 Hb_000189_240 Hb_001053_140--Hb_000189_240 Hb_001053_140--Hb_005269_080 Hb_007037_020--Hb_011021_040 Hb_001172_120 Hb_001172_120 Hb_007037_020--Hb_001172_120 Hb_013399_050 Hb_013399_050 Hb_007037_020--Hb_013399_050 Hb_007037_020--Hb_002016_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1686 7.50977 12.8842 21.824 5.41755 7.31073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3245 46.4234 33.3251 14.6444 16.6295

CAGE analysis