Hb_000638_170

Information

Type -
Description -
Location Contig638: 139112-144907
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04200g
description POPTRDRAFT_832239; GTP-binding family protein
nr
ID XP_012076109.1
description PREDICTED: ras-related protein RABC1 [Jatropha curcas]
swissprot
ID O23657
description Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=1 SV=1
trembl
ID A0A067KDX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12796 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabc1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52024: 139192-144799 , PASA_asmbl_52026: 140114-140331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_170 0.0 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
2 Hb_009486_020 0.056484172 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
3 Hb_002303_060 0.0798759458 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000336_240 0.082755834 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
5 Hb_114310_080 0.0843400267 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000483_390 0.0860150458 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
7 Hb_000805_240 0.086289873 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
8 Hb_000701_100 0.0898618923 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
9 Hb_000107_300 0.0911128646 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
10 Hb_000826_100 0.0953323247 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
11 Hb_000189_240 0.0962605605 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
12 Hb_007009_010 0.0974094372 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
13 Hb_152784_010 0.0974154142 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
14 Hb_148121_040 0.0987125711 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
15 Hb_005269_080 0.0991646841 - - protein with unknown function [Ricinus communis]
16 Hb_003605_160 0.0997425478 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
17 Hb_002324_010 0.1003960815 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
18 Hb_148209_010 0.1016627892 - - RAS-related GTP-binding family protein [Populus trichocarpa]
19 Hb_029388_030 0.1022468909 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
20 Hb_004052_050 0.1025159269 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]

Gene co-expression network

sample Hb_000638_170 Hb_000638_170 Hb_009486_020 Hb_009486_020 Hb_000638_170--Hb_009486_020 Hb_002303_060 Hb_002303_060 Hb_000638_170--Hb_002303_060 Hb_000336_240 Hb_000336_240 Hb_000638_170--Hb_000336_240 Hb_114310_080 Hb_114310_080 Hb_000638_170--Hb_114310_080 Hb_000483_390 Hb_000483_390 Hb_000638_170--Hb_000483_390 Hb_000805_240 Hb_000805_240 Hb_000638_170--Hb_000805_240 Hb_004052_050 Hb_004052_050 Hb_009486_020--Hb_004052_050 Hb_148121_040 Hb_148121_040 Hb_009486_020--Hb_148121_040 Hb_009486_020--Hb_000805_240 Hb_009486_020--Hb_114310_080 Hb_006831_120 Hb_006831_120 Hb_009486_020--Hb_006831_120 Hb_005269_080 Hb_005269_080 Hb_002303_060--Hb_005269_080 Hb_001053_140 Hb_001053_140 Hb_002303_060--Hb_001053_140 Hb_000189_240 Hb_000189_240 Hb_002303_060--Hb_000189_240 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_003605_160 Hb_003605_160 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300 Hb_010883_050 Hb_010883_050 Hb_000336_240--Hb_010883_050 Hb_007009_010 Hb_007009_010 Hb_000336_240--Hb_007009_010 Hb_004889_010 Hb_004889_010 Hb_000336_240--Hb_004889_010 Hb_000363_360 Hb_000363_360 Hb_000336_240--Hb_000363_360 Hb_002007_210 Hb_002007_210 Hb_000336_240--Hb_002007_210 Hb_000985_060 Hb_000985_060 Hb_114310_080--Hb_000985_060 Hb_028515_010 Hb_028515_010 Hb_114310_080--Hb_028515_010 Hb_029388_030 Hb_029388_030 Hb_114310_080--Hb_029388_030 Hb_114310_080--Hb_000483_390 Hb_000417_260 Hb_000417_260 Hb_114310_080--Hb_000417_260 Hb_001461_010 Hb_001461_010 Hb_114310_080--Hb_001461_010 Hb_003414_050 Hb_003414_050 Hb_000483_390--Hb_003414_050 Hb_011381_080 Hb_011381_080 Hb_000483_390--Hb_011381_080 Hb_003671_020 Hb_003671_020 Hb_000483_390--Hb_003671_020 Hb_000483_390--Hb_028515_010 Hb_021068_040 Hb_021068_040 Hb_000805_240--Hb_021068_040 Hb_006615_240 Hb_006615_240 Hb_000805_240--Hb_006615_240 Hb_009615_070 Hb_009615_070 Hb_000805_240--Hb_009615_070 Hb_008071_020 Hb_008071_020 Hb_000805_240--Hb_008071_020 Hb_004696_080 Hb_004696_080 Hb_000805_240--Hb_004696_080 Hb_152784_010 Hb_152784_010 Hb_000805_240--Hb_152784_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.78 16.475 27.2025 69.9128 21.1321 24.9007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.5143 97.6401 74.3957 22.9121 23.5738

CAGE analysis