Hb_009486_020

Information

Type -
Description -
Location Contig9486: 5854-8462
Sequence    

Annotation

kegg
ID rcu:RCOM_0658170
description nucleoside diphosphate kinase, putative (EC:2.7.4.6)
nr
ID ADR30796.1
description nucleoside diphosphate kinase 1 [Hevea brasiliensis]
swissprot
ID P47920
description Nucleoside diphosphate kinase B OS=Flaveria bidentis PE=2 SV=1
trembl
ID I1SN93
description Nucleoside diphosphate kinase OS=Hevea brasiliensis GN=NDK1 PE=2 SV=1
Gene Ontology
ID GO:0004550
description nucleoside diphosphate kinase b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63336: 6349-8811
cDNA
(Sanger)
(ID:Location)		 005_B17.ab1: 6501-7381 , 007_N19.ab1: 6420-8811 , 009_D04.ab1: 6511-8811 , 009_O24.ab1: 6404-8811 , 010_C01.ab1: 6394-8811 , 016_L11.ab1: 6438-8811 , 029_M12.ab1: 6501-8818 , 030_B13.ab1: 6513-8818 , 043_L08.ab1: 6531-8794 , 044_D22.ab1: 6531-8794 , 044_H18.ab1: 6531-8794 , 046_G22.ab1: 6501-8818

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_020 0.0 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
2 Hb_000638_170 0.056484172 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
3 Hb_004052_050 0.0761136608 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
4 Hb_148121_040 0.0880549186 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
5 Hb_000805_240 0.0884670887 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
6 Hb_114310_080 0.0913515338 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006831_120 0.0947882574 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
8 Hb_152784_010 0.0973626337 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
9 Hb_000103_320 0.0979700278 - - Stem-specific protein TSJT1, putative [Ricinus communis]
10 Hb_000261_140 0.0986262422 - - -
11 Hb_011609_020 0.0996837139 - - conserved hypothetical protein [Ricinus communis]
12 Hb_029388_030 0.100075284 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
13 Hb_002303_060 0.1020851888 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000701_100 0.1024141955 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
15 Hb_000189_240 0.1025291868 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
16 Hb_000638_250 0.1032378153 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_000826_100 0.103687651 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
18 Hb_002007_210 0.1040596509 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
19 Hb_000336_240 0.1044757277 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
20 Hb_001726_040 0.1076186638 - - hypothetical protein CICLE_v10029230mg [Citrus clementina]

Gene co-expression network

sample Hb_009486_020 Hb_009486_020 Hb_000638_170 Hb_000638_170 Hb_009486_020--Hb_000638_170 Hb_004052_050 Hb_004052_050 Hb_009486_020--Hb_004052_050 Hb_148121_040 Hb_148121_040 Hb_009486_020--Hb_148121_040 Hb_000805_240 Hb_000805_240 Hb_009486_020--Hb_000805_240 Hb_114310_080 Hb_114310_080 Hb_009486_020--Hb_114310_080 Hb_006831_120 Hb_006831_120 Hb_009486_020--Hb_006831_120 Hb_002303_060 Hb_002303_060 Hb_000638_170--Hb_002303_060 Hb_000336_240 Hb_000336_240 Hb_000638_170--Hb_000336_240 Hb_000638_170--Hb_114310_080 Hb_000483_390 Hb_000483_390 Hb_000638_170--Hb_000483_390 Hb_000638_170--Hb_000805_240 Hb_018124_010 Hb_018124_010 Hb_004052_050--Hb_018124_010 Hb_004052_050--Hb_000805_240 Hb_001247_100 Hb_001247_100 Hb_004052_050--Hb_001247_100 Hb_152784_010 Hb_152784_010 Hb_004052_050--Hb_152784_010 Hb_007192_100 Hb_007192_100 Hb_004052_050--Hb_007192_100 Hb_000608_050 Hb_000608_050 Hb_148121_040--Hb_000608_050 Hb_000638_250 Hb_000638_250 Hb_148121_040--Hb_000638_250 Hb_004696_080 Hb_004696_080 Hb_148121_040--Hb_004696_080 Hb_148121_040--Hb_152784_010 Hb_005054_210 Hb_005054_210 Hb_148121_040--Hb_005054_210 Hb_000403_060 Hb_000403_060 Hb_148121_040--Hb_000403_060 Hb_021068_040 Hb_021068_040 Hb_000805_240--Hb_021068_040 Hb_006615_240 Hb_006615_240 Hb_000805_240--Hb_006615_240 Hb_009615_070 Hb_009615_070 Hb_000805_240--Hb_009615_070 Hb_008071_020 Hb_008071_020 Hb_000805_240--Hb_008071_020 Hb_000805_240--Hb_004696_080 Hb_000805_240--Hb_152784_010 Hb_000985_060 Hb_000985_060 Hb_114310_080--Hb_000985_060 Hb_028515_010 Hb_028515_010 Hb_114310_080--Hb_028515_010 Hb_029388_030 Hb_029388_030 Hb_114310_080--Hb_029388_030 Hb_114310_080--Hb_000483_390 Hb_000417_260 Hb_000417_260 Hb_114310_080--Hb_000417_260 Hb_001461_010 Hb_001461_010 Hb_114310_080--Hb_001461_010 Hb_001776_160 Hb_001776_160 Hb_006831_120--Hb_001776_160 Hb_000103_320 Hb_000103_320 Hb_006831_120--Hb_000103_320 Hb_006831_120--Hb_000638_250 Hb_000340_570 Hb_000340_570 Hb_006831_120--Hb_000340_570 Hb_028872_080 Hb_028872_080 Hb_006831_120--Hb_028872_080 Hb_000140_050 Hb_000140_050 Hb_006831_120--Hb_000140_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
181.155 137.094 210.114 397.675 104.996 166.877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
396.946 580.225 491.279 132.942 104.004

CAGE analysis