Hb_003605_160

Information

Type -
Description -
Location Contig3605: 102886-110935
Sequence    

Annotation

kegg
ID pop:POPTR_0013s12040g
description hypothetical protein
nr
ID XP_011038181.1
description PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9MW51
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12040g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37149: 102837-110758 , PASA_asmbl_37150: 102881-110735 , PASA_asmbl_37151: 110509-110619
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003605_160 0.0 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
2 Hb_000826_100 0.0557431182 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
3 Hb_000189_240 0.0639940854 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
4 Hb_002303_060 0.0719031754 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002000_140 0.0763684146 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
6 Hb_008071_020 0.0919589773 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
7 Hb_001329_150 0.0937897059 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
8 Hb_000317_390 0.0939522865 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
9 Hb_028396_010 0.0948995073 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
10 Hb_002314_010 0.0951337361 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
11 Hb_001318_250 0.095143051 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
12 Hb_006915_040 0.0954930166 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
13 Hb_000107_300 0.0963555071 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
14 Hb_152784_010 0.0969063075 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
15 Hb_010560_030 0.0977079799 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
16 Hb_000808_190 0.097723953 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
17 Hb_026314_020 0.099543049 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
18 Hb_000638_170 0.0997425478 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
19 Hb_001053_140 0.1007175635 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
20 Hb_000419_070 0.1030989966 - - V-type proton ATPase subunit G 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003605_160 Hb_003605_160 Hb_000826_100 Hb_000826_100 Hb_003605_160--Hb_000826_100 Hb_000189_240 Hb_000189_240 Hb_003605_160--Hb_000189_240 Hb_002303_060 Hb_002303_060 Hb_003605_160--Hb_002303_060 Hb_002000_140 Hb_002000_140 Hb_003605_160--Hb_002000_140 Hb_008071_020 Hb_008071_020 Hb_003605_160--Hb_008071_020 Hb_001329_150 Hb_001329_150 Hb_003605_160--Hb_001329_150 Hb_000826_100--Hb_000189_240 Hb_007441_330 Hb_007441_330 Hb_000826_100--Hb_007441_330 Hb_000826_100--Hb_008071_020 Hb_026314_020 Hb_026314_020 Hb_000826_100--Hb_026314_020 Hb_026053_020 Hb_026053_020 Hb_000826_100--Hb_026053_020 Hb_000189_240--Hb_026053_020 Hb_000189_240--Hb_002000_140 Hb_000189_240--Hb_002303_060 Hb_000189_240--Hb_008071_020 Hb_005269_080 Hb_005269_080 Hb_002303_060--Hb_005269_080 Hb_001053_140 Hb_001053_140 Hb_002303_060--Hb_001053_140 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300 Hb_002000_140--Hb_002303_060 Hb_000431_070 Hb_000431_070 Hb_002000_140--Hb_000431_070 Hb_001512_080 Hb_001512_080 Hb_002000_140--Hb_001512_080 Hb_002000_140--Hb_001329_150 Hb_002000_140--Hb_005269_080 Hb_001931_010 Hb_001931_010 Hb_008071_020--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_008071_020--Hb_001279_080 Hb_028396_010 Hb_028396_010 Hb_008071_020--Hb_028396_010 Hb_008071_020--Hb_026053_020 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_000045_310 Hb_000045_310 Hb_008071_020--Hb_000045_310 Hb_001329_150--Hb_001053_140 Hb_000419_070 Hb_000419_070 Hb_001329_150--Hb_000419_070 Hb_000571_020 Hb_000571_020 Hb_001329_150--Hb_000571_020 Hb_001329_150--Hb_002303_060 Hb_001329_150--Hb_000189_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9674 6.97919 29.4661 48.7299 12.8847 20.2883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.0245 63.4798 37.2397 18.1071 20.0532

CAGE analysis