Hb_002314_010

Information

Type -
Description -
Location Contig2314: 71923-72865
Sequence    

Annotation

kegg
ID pop:POPTR_0006s01740g
description POPTRDRAFT_560196; hypothetical protein
nr
ID KDP41305.1
description hypothetical protein JCGZ_15712 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9Y4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15712 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh-ubiquinone oxidoreductase kda subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24349: 71887-72853
cDNA
(Sanger)
(ID:Location)		 023_E15.ab1: 71915-72681 , 024_M07.ab1: 71889-72644 , 030_O15.ab1: 71915-72680

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002314_010 0.0 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
2 Hb_000215_330 0.0632599994 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
3 Hb_000107_300 0.0659864416 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
4 Hb_002303_060 0.0692890712 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005306_070 0.0898718292 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
6 Hb_001053_140 0.0947921342 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
7 Hb_003605_160 0.0951337361 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
8 Hb_045003_010 0.1014837375 - - Stomatin-1, putative [Ricinus communis]
9 Hb_003376_190 0.1021162923 - - syntaxin, putative [Ricinus communis]
10 Hb_005269_080 0.102283148 - - protein with unknown function [Ricinus communis]
11 Hb_001329_150 0.104006759 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
12 Hb_000009_290 0.1043538286 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
13 Hb_003494_050 0.1044615612 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
14 Hb_001353_010 0.1045806166 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
15 Hb_000826_100 0.1056088466 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
16 Hb_010560_030 0.1069663321 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
17 Hb_001019_150 0.1078413995 - - Acyl-protein thioesterase, putative [Ricinus communis]
18 Hb_002000_140 0.1080577271 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
19 Hb_000189_240 0.1081969468 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
20 Hb_001410_060 0.1106102867 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]

Gene co-expression network

sample Hb_002314_010 Hb_002314_010 Hb_000215_330 Hb_000215_330 Hb_002314_010--Hb_000215_330 Hb_000107_300 Hb_000107_300 Hb_002314_010--Hb_000107_300 Hb_002303_060 Hb_002303_060 Hb_002314_010--Hb_002303_060 Hb_005306_070 Hb_005306_070 Hb_002314_010--Hb_005306_070 Hb_001053_140 Hb_001053_140 Hb_002314_010--Hb_001053_140 Hb_003605_160 Hb_003605_160 Hb_002314_010--Hb_003605_160 Hb_000215_330--Hb_005306_070 Hb_000215_330--Hb_000107_300 Hb_003376_190 Hb_003376_190 Hb_000215_330--Hb_003376_190 Hb_003494_050 Hb_003494_050 Hb_000215_330--Hb_003494_050 Hb_000215_330--Hb_002303_060 Hb_000107_300--Hb_003376_190 Hb_000107_300--Hb_002303_060 Hb_000107_300--Hb_005306_070 Hb_000826_100 Hb_000826_100 Hb_000107_300--Hb_000826_100 Hb_005269_080 Hb_005269_080 Hb_002303_060--Hb_005269_080 Hb_002303_060--Hb_001053_140 Hb_000189_240 Hb_000189_240 Hb_002303_060--Hb_000189_240 Hb_002303_060--Hb_003605_160 Hb_000739_140 Hb_000739_140 Hb_005306_070--Hb_000739_140 Hb_001410_060 Hb_001410_060 Hb_005306_070--Hb_001410_060 Hb_005306_070--Hb_003494_050 Hb_005306_070--Hb_005269_080 Hb_001329_150 Hb_001329_150 Hb_001053_140--Hb_001329_150 Hb_000419_070 Hb_000419_070 Hb_001053_140--Hb_000419_070 Hb_010560_030 Hb_010560_030 Hb_001053_140--Hb_010560_030 Hb_001053_140--Hb_000189_240 Hb_001053_140--Hb_005269_080 Hb_003605_160--Hb_000826_100 Hb_003605_160--Hb_000189_240 Hb_002000_140 Hb_002000_140 Hb_003605_160--Hb_002000_140 Hb_008071_020 Hb_008071_020 Hb_003605_160--Hb_008071_020 Hb_003605_160--Hb_001329_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.5376 17.3366 48.4057 111.561 24.2826 29.8946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
81.7043 150.244 54.1561 32.4386 48.6792

CAGE analysis