Hb_000045_310

Information

Type -
Description -
Location Contig45: 289325-294422
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06490g
description POPTRDRAFT_765536; microsomal signal peptidase 25 kDa subunit family protein
nr
ID XP_012087896.1
description PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
swissprot
ID P58684
description Probable signal peptidase complex subunit 2 OS=Arabidopsis thaliana GN=At2g39960 PE=2 SV=1
trembl
ID A9PGG4
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0005787
description probable signal peptidase complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43154: 292831-292958
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_310 0.0 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
2 Hb_000566_120 0.0461497194 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
3 Hb_028396_010 0.0628911292 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
4 Hb_006573_190 0.0639296365 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
5 Hb_024650_070 0.0643812395 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
6 Hb_008071_020 0.0662834079 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
7 Hb_001931_010 0.0666755916 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
8 Hb_000317_390 0.0673985308 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
9 Hb_000431_070 0.0677226639 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
10 Hb_001279_080 0.0681542613 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
11 Hb_001341_150 0.0695228501 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
12 Hb_010361_010 0.0701922451 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
13 Hb_006326_040 0.0735881934 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000390_300 0.0736460798 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
15 Hb_006615_240 0.0746141478 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
16 Hb_026889_030 0.076571994 - - protein with unknown function [Ricinus communis]
17 Hb_000571_020 0.0770588523 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
18 Hb_000347_240 0.0803792477 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
19 Hb_154948_040 0.0816410433 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
20 Hb_005054_210 0.0816822527 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]

Gene co-expression network

sample Hb_000045_310 Hb_000045_310 Hb_000566_120 Hb_000566_120 Hb_000045_310--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_000045_310--Hb_028396_010 Hb_006573_190 Hb_006573_190 Hb_000045_310--Hb_006573_190 Hb_024650_070 Hb_024650_070 Hb_000045_310--Hb_024650_070 Hb_008071_020 Hb_008071_020 Hb_000045_310--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_000045_310--Hb_001931_010 Hb_000566_120--Hb_006573_190 Hb_000566_120--Hb_001931_010 Hb_012799_170 Hb_012799_170 Hb_000566_120--Hb_012799_170 Hb_010361_010 Hb_010361_010 Hb_000566_120--Hb_010361_010 Hb_000390_300 Hb_000390_300 Hb_000566_120--Hb_000390_300 Hb_028396_010--Hb_008071_020 Hb_001341_150 Hb_001341_150 Hb_028396_010--Hb_001341_150 Hb_028396_010--Hb_001931_010 Hb_000189_240 Hb_000189_240 Hb_028396_010--Hb_000189_240 Hb_001279_080 Hb_001279_080 Hb_028396_010--Hb_001279_080 Hb_000003_230 Hb_000003_230 Hb_006573_190--Hb_000003_230 Hb_004586_420 Hb_004586_420 Hb_006573_190--Hb_004586_420 Hb_003582_060 Hb_003582_060 Hb_006573_190--Hb_003582_060 Hb_001828_150 Hb_001828_150 Hb_006573_190--Hb_001828_150 Hb_006573_190--Hb_000390_300 Hb_000329_200 Hb_000329_200 Hb_024650_070--Hb_000329_200 Hb_024650_070--Hb_010361_010 Hb_005551_040 Hb_005551_040 Hb_024650_070--Hb_005551_040 Hb_024650_070--Hb_000566_120 Hb_024650_070--Hb_028396_010 Hb_008071_020--Hb_001931_010 Hb_008071_020--Hb_001279_080 Hb_026053_020 Hb_026053_020 Hb_008071_020--Hb_026053_020 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_001931_010--Hb_006326_040 Hb_001931_010--Hb_001341_150 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_001931_010--Hb_001279_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0103 11.1411 30.2154 33.946 18.9133 21.7906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.3066 50.8639 30.7685 22.0283 23.4013

CAGE analysis