Hb_012799_170

Information

Type -
Description -
Location Contig12799: 99187-103094
Sequence    

Annotation

kegg
ID pop:POPTR_0015s13440g
description POPTRDRAFT_667000; hypothetical protein
nr
ID XP_012090281.1
description PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JEQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26133 PE=4 SV=1
Gene Ontology
ID GO:0004864
description protein phosphatase inhibitor 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08653: 99300-102517 , PASA_asmbl_08654: 99535-100231 , PASA_asmbl_08655: 99295-103096
cDNA
(Sanger)
(ID:Location)		 002_G21.ab1: 99295-102967 , 015_G13.ab1: 99295-102940 , 018_I17.ab1: 99295-102923

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_170 0.0 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
2 Hb_005167_010 0.0560879429 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
3 Hb_000566_120 0.062872878 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
4 Hb_003622_030 0.0661328045 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
5 Hb_001322_110 0.0689259693 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001195_060 0.0790497887 - - Protein yrdA, putative [Ricinus communis]
7 Hb_002540_080 0.0809493342 - - cysteine-type peptidase, putative [Ricinus communis]
8 Hb_006846_150 0.0818817822 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002968_040 0.0819583134 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
10 Hb_006573_190 0.0825333744 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
11 Hb_000811_070 0.0841538883 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
12 Hb_003728_060 0.0850102175 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
13 Hb_001931_010 0.0883846041 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
14 Hb_002871_190 0.0901427204 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
15 Hb_010361_010 0.0914392355 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
16 Hb_026889_030 0.0936485862 - - protein with unknown function [Ricinus communis]
17 Hb_000045_310 0.0936699621 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
18 Hb_001279_080 0.0938008437 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
19 Hb_011457_050 0.0939965431 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
20 Hb_000920_200 0.094891135 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012799_170 Hb_012799_170 Hb_005167_010 Hb_005167_010 Hb_012799_170--Hb_005167_010 Hb_000566_120 Hb_000566_120 Hb_012799_170--Hb_000566_120 Hb_003622_030 Hb_003622_030 Hb_012799_170--Hb_003622_030 Hb_001322_110 Hb_001322_110 Hb_012799_170--Hb_001322_110 Hb_001195_060 Hb_001195_060 Hb_012799_170--Hb_001195_060 Hb_002540_080 Hb_002540_080 Hb_012799_170--Hb_002540_080 Hb_005167_010--Hb_001195_060 Hb_006132_090 Hb_006132_090 Hb_005167_010--Hb_006132_090 Hb_000080_130 Hb_000080_130 Hb_005167_010--Hb_000080_130 Hb_004545_110 Hb_004545_110 Hb_005167_010--Hb_004545_110 Hb_007975_060 Hb_007975_060 Hb_005167_010--Hb_007975_060 Hb_000045_310 Hb_000045_310 Hb_000566_120--Hb_000045_310 Hb_006573_190 Hb_006573_190 Hb_000566_120--Hb_006573_190 Hb_001931_010 Hb_001931_010 Hb_000566_120--Hb_001931_010 Hb_010361_010 Hb_010361_010 Hb_000566_120--Hb_010361_010 Hb_000390_300 Hb_000390_300 Hb_000566_120--Hb_000390_300 Hb_003622_030--Hb_002540_080 Hb_014720_110 Hb_014720_110 Hb_003622_030--Hb_014720_110 Hb_003622_030--Hb_000566_120 Hb_002968_040 Hb_002968_040 Hb_003622_030--Hb_002968_040 Hb_011457_050 Hb_011457_050 Hb_003622_030--Hb_011457_050 Hb_000137_040 Hb_000137_040 Hb_001322_110--Hb_000137_040 Hb_002408_020 Hb_002408_020 Hb_001322_110--Hb_002408_020 Hb_003124_150 Hb_003124_150 Hb_001322_110--Hb_003124_150 Hb_000811_070 Hb_000811_070 Hb_001322_110--Hb_000811_070 Hb_000510_290 Hb_000510_290 Hb_001322_110--Hb_000510_290 Hb_000920_200 Hb_000920_200 Hb_001195_060--Hb_000920_200 Hb_005765_050 Hb_005765_050 Hb_001195_060--Hb_005765_050 Hb_000127_140 Hb_000127_140 Hb_001195_060--Hb_000127_140 Hb_001195_060--Hb_004545_110 Hb_000676_390 Hb_000676_390 Hb_002540_080--Hb_000676_390 Hb_026889_030 Hb_026889_030 Hb_002540_080--Hb_026889_030 Hb_000160_180 Hb_000160_180 Hb_002540_080--Hb_000160_180 Hb_001318_260 Hb_001318_260 Hb_002540_080--Hb_001318_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2484 10.0564 38.7042 31.8989 19.7055 16.653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.236 49.3536 33.5438 20.2673 37.361

CAGE analysis