Hb_000127_140

Information

Type -
Description -
Location Contig127: 184919-190795
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21850g
description POPTRDRAFT_559417; transporter-related family protein
nr
ID XP_002307514.1
description transporter-related family protein [Populus trichocarpa]
swissprot
ID Q9SRE4
description UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1
trembl
ID B9H7W1
description Transporter-related family protein OS=Populus trichocarpa GN=POPTR_0005s21850g PE=4 SV=1
Gene Ontology
ID GO:0005338
description udp-galactose transporter 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08289: 184992-190861 , PASA_asmbl_08291: 188092-188390 , PASA_asmbl_08292: 188506-188883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_140 0.0 - - transporter-related family protein [Populus trichocarpa]
2 Hb_007894_010 0.07027183 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
3 Hb_008147_090 0.077722449 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001951_130 0.0794627379 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
5 Hb_001195_060 0.0810324449 - - Protein yrdA, putative [Ricinus communis]
6 Hb_000666_100 0.0827397307 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
7 Hb_002184_090 0.0827513943 - - DNA binding protein, putative [Ricinus communis]
8 Hb_010407_140 0.0842888697 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
9 Hb_004223_050 0.0856702291 - - hexokinase [Manihot esculenta]
10 Hb_010368_050 0.0881530464 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
11 Hb_000392_340 0.0923589069 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
12 Hb_166574_010 0.0939952609 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
13 Hb_000329_210 0.0962481861 - - Golgi snare 12 isoform 1 [Theobroma cacao]
14 Hb_004545_110 0.0969497235 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
15 Hb_000768_210 0.09851007 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
16 Hb_005054_080 0.0988876636 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
17 Hb_000721_030 0.1004091159 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
18 Hb_052805_010 0.1029130639 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
19 Hb_000244_170 0.1053737672 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
20 Hb_019181_030 0.1054735198 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000127_140 Hb_000127_140 Hb_007894_010 Hb_007894_010 Hb_000127_140--Hb_007894_010 Hb_008147_090 Hb_008147_090 Hb_000127_140--Hb_008147_090 Hb_001951_130 Hb_001951_130 Hb_000127_140--Hb_001951_130 Hb_001195_060 Hb_001195_060 Hb_000127_140--Hb_001195_060 Hb_000666_100 Hb_000666_100 Hb_000127_140--Hb_000666_100 Hb_002184_090 Hb_002184_090 Hb_000127_140--Hb_002184_090 Hb_010407_140 Hb_010407_140 Hb_007894_010--Hb_010407_140 Hb_005701_120 Hb_005701_120 Hb_007894_010--Hb_005701_120 Hb_000197_020 Hb_000197_020 Hb_007894_010--Hb_000197_020 Hb_000136_100 Hb_000136_100 Hb_007894_010--Hb_000136_100 Hb_001957_010 Hb_001957_010 Hb_007894_010--Hb_001957_010 Hb_180343_010 Hb_180343_010 Hb_008147_090--Hb_180343_010 Hb_000029_070 Hb_000029_070 Hb_008147_090--Hb_000029_070 Hb_002392_010 Hb_002392_010 Hb_008147_090--Hb_002392_010 Hb_008147_090--Hb_001195_060 Hb_008147_090--Hb_002184_090 Hb_010368_050 Hb_010368_050 Hb_001951_130--Hb_010368_050 Hb_000392_340 Hb_000392_340 Hb_001951_130--Hb_000392_340 Hb_005054_080 Hb_005054_080 Hb_001951_130--Hb_005054_080 Hb_001951_130--Hb_008147_090 Hb_000062_330 Hb_000062_330 Hb_001951_130--Hb_000062_330 Hb_005167_010 Hb_005167_010 Hb_001195_060--Hb_005167_010 Hb_000920_200 Hb_000920_200 Hb_001195_060--Hb_000920_200 Hb_005765_050 Hb_005765_050 Hb_001195_060--Hb_005765_050 Hb_012799_170 Hb_012799_170 Hb_001195_060--Hb_012799_170 Hb_004545_110 Hb_004545_110 Hb_001195_060--Hb_004545_110 Hb_000666_100--Hb_004545_110 Hb_003057_060 Hb_003057_060 Hb_000666_100--Hb_003057_060 Hb_013575_010 Hb_013575_010 Hb_000666_100--Hb_013575_010 Hb_008616_050 Hb_008616_050 Hb_000666_100--Hb_008616_050 Hb_000200_020 Hb_000200_020 Hb_000666_100--Hb_000200_020 Hb_002641_060 Hb_002641_060 Hb_000666_100--Hb_002641_060 Hb_002184_090--Hb_001195_060 Hb_000329_210 Hb_000329_210 Hb_002184_090--Hb_000329_210 Hb_004257_010 Hb_004257_010 Hb_002184_090--Hb_004257_010 Hb_002184_090--Hb_180343_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.89764 1.04838 5.06605 8.17993 2.62128 3.05577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.34796 4.43889 4.55282 3.26469 3.59709

CAGE analysis