Hb_000029_070

Information

Type -
Description -
Location Contig29: 87418-98006
Sequence    

Annotation

kegg
ID rcu:RCOM_1282180
description Cold-inducible RNA-binding protein, putative
nr
ID XP_012077851.1
description PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
swissprot
ID Q6DRG1
description RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2
trembl
ID A0A067KA53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13563 PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30345: 88516-98283 , PASA_asmbl_30346: 90067-90467 , PASA_asmbl_30347: 91919-92317
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_070 0.0 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
2 Hb_008147_090 0.0743923862 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000768_210 0.0946719603 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
4 Hb_001865_090 0.100976547 - - hypothetical protein VITISV_005773 [Vitis vinifera]
5 Hb_002518_210 0.1059295778 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
6 Hb_045003_010 0.1068186944 - - Stomatin-1, putative [Ricinus communis]
7 Hb_000127_140 0.1081672667 - - transporter-related family protein [Populus trichocarpa]
8 Hb_001353_010 0.1098181164 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
9 Hb_086085_020 0.1129042828 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
10 Hb_008841_020 0.1130947042 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
11 Hb_025098_010 0.1165830277 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_001195_060 0.1182000162 - - Protein yrdA, putative [Ricinus communis]
13 Hb_004159_020 0.1182203939 - - Putative dihydrodipicolinate reductase 2, chloroplastic [Aegilops tauschii]
14 Hb_000566_120 0.1196084986 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
15 Hb_180343_010 0.1214602891 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
16 Hb_002042_150 0.121524625 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
17 Hb_006326_040 0.1222763053 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000392_340 0.122429701 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
19 Hb_000310_090 0.1230675354 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
20 Hb_166574_010 0.1231448738 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_070 Hb_000029_070 Hb_008147_090 Hb_008147_090 Hb_000029_070--Hb_008147_090 Hb_000768_210 Hb_000768_210 Hb_000029_070--Hb_000768_210 Hb_001865_090 Hb_001865_090 Hb_000029_070--Hb_001865_090 Hb_002518_210 Hb_002518_210 Hb_000029_070--Hb_002518_210 Hb_045003_010 Hb_045003_010 Hb_000029_070--Hb_045003_010 Hb_000127_140 Hb_000127_140 Hb_000029_070--Hb_000127_140 Hb_180343_010 Hb_180343_010 Hb_008147_090--Hb_180343_010 Hb_008147_090--Hb_000127_140 Hb_002392_010 Hb_002392_010 Hb_008147_090--Hb_002392_010 Hb_001195_060 Hb_001195_060 Hb_008147_090--Hb_001195_060 Hb_002184_090 Hb_002184_090 Hb_008147_090--Hb_002184_090 Hb_000768_210--Hb_002518_210 Hb_001366_370 Hb_001366_370 Hb_000768_210--Hb_001366_370 Hb_002053_140 Hb_002053_140 Hb_000768_210--Hb_002053_140 Hb_001232_190 Hb_001232_190 Hb_000768_210--Hb_001232_190 Hb_024650_070 Hb_024650_070 Hb_000768_210--Hb_024650_070 Hb_086085_020 Hb_086085_020 Hb_000768_210--Hb_086085_020 Hb_166574_010 Hb_166574_010 Hb_001865_090--Hb_166574_010 Hb_001865_090--Hb_008147_090 Hb_001754_080 Hb_001754_080 Hb_001865_090--Hb_001754_080 Hb_000120_770 Hb_000120_770 Hb_001865_090--Hb_000120_770 Hb_001489_110 Hb_001489_110 Hb_001865_090--Hb_001489_110 Hb_001189_070 Hb_001189_070 Hb_002518_210--Hb_001189_070 Hb_008841_020 Hb_008841_020 Hb_002518_210--Hb_008841_020 Hb_003633_030 Hb_003633_030 Hb_002518_210--Hb_003633_030 Hb_000141_080 Hb_000141_080 Hb_002518_210--Hb_000141_080 Hb_002518_210--Hb_001366_370 Hb_002042_150 Hb_002042_150 Hb_045003_010--Hb_002042_150 Hb_001353_010 Hb_001353_010 Hb_045003_010--Hb_001353_010 Hb_154948_040 Hb_154948_040 Hb_045003_010--Hb_154948_040 Hb_000566_120 Hb_000566_120 Hb_045003_010--Hb_000566_120 Hb_006326_040 Hb_006326_040 Hb_045003_010--Hb_006326_040 Hb_002995_050 Hb_002995_050 Hb_045003_010--Hb_002995_050 Hb_007894_010 Hb_007894_010 Hb_000127_140--Hb_007894_010 Hb_001951_130 Hb_001951_130 Hb_000127_140--Hb_001951_130 Hb_000127_140--Hb_001195_060 Hb_000666_100 Hb_000666_100 Hb_000127_140--Hb_000666_100 Hb_000127_140--Hb_002184_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.78879 0.486966 3.29913 5.03938 1.10677 2.75349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.01807 4.41618 2.66113 2.41103 2.93431

CAGE analysis