Hb_180343_010

Information

Type -
Description -
Location Contig180343: 2809-5025
Sequence    

Annotation

kegg
ID rcu:RCOM_0687720
description Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative
nr
ID XP_002520803.1
description Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S484
description Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative OS=Ricinus communis GN=RCOM_0687720 PE=4 SV=1
Gene Ontology
ID GO:0009507
description biotin carboxyl carrier protein of acetyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17443: 3029-3425 , PASA_asmbl_17444: 3485-3870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180343_010 0.0 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
2 Hb_008147_090 0.0707094741 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001662_130 0.0891278604 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
4 Hb_000392_340 0.0935985752 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
5 Hb_021409_080 0.0939383834 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
6 Hb_001489_110 0.094252775 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
7 Hb_002184_090 0.0942913795 - - DNA binding protein, putative [Ricinus communis]
8 Hb_001353_010 0.0946330404 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
9 Hb_000428_060 0.0953192645 - - malate dehydrogenase, putative [Ricinus communis]
10 Hb_002392_010 0.0963393457 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
11 Hb_066842_010 0.099453073 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
12 Hb_002110_100 0.1000106947 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
13 Hb_000329_210 0.1006924819 - - Golgi snare 12 isoform 1 [Theobroma cacao]
14 Hb_001195_060 0.1029180674 - - Protein yrdA, putative [Ricinus communis]
15 Hb_004257_010 0.1029342578 - - CMP-sialic acid transporter, putative [Ricinus communis]
16 Hb_001019_150 0.1030218454 - - Acyl-protein thioesterase, putative [Ricinus communis]
17 Hb_000590_120 0.1043367147 - - dehydroascorbate reductase, putative [Ricinus communis]
18 Hb_002301_160 0.1043401012 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
19 Hb_005765_050 0.1048154323 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
20 Hb_076233_040 0.1053566294 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_180343_010 Hb_180343_010 Hb_008147_090 Hb_008147_090 Hb_180343_010--Hb_008147_090 Hb_001662_130 Hb_001662_130 Hb_180343_010--Hb_001662_130 Hb_000392_340 Hb_000392_340 Hb_180343_010--Hb_000392_340 Hb_021409_080 Hb_021409_080 Hb_180343_010--Hb_021409_080 Hb_001489_110 Hb_001489_110 Hb_180343_010--Hb_001489_110 Hb_002184_090 Hb_002184_090 Hb_180343_010--Hb_002184_090 Hb_000029_070 Hb_000029_070 Hb_008147_090--Hb_000029_070 Hb_000127_140 Hb_000127_140 Hb_008147_090--Hb_000127_140 Hb_002392_010 Hb_002392_010 Hb_008147_090--Hb_002392_010 Hb_001195_060 Hb_001195_060 Hb_008147_090--Hb_001195_060 Hb_008147_090--Hb_002184_090 Hb_004951_060 Hb_004951_060 Hb_001662_130--Hb_004951_060 Hb_000080_130 Hb_000080_130 Hb_001662_130--Hb_000080_130 Hb_000590_120 Hb_000590_120 Hb_001662_130--Hb_000590_120 Hb_015675_040 Hb_015675_040 Hb_001662_130--Hb_015675_040 Hb_001766_050 Hb_001766_050 Hb_001662_130--Hb_001766_050 Hb_005653_070 Hb_005653_070 Hb_001662_130--Hb_005653_070 Hb_005054_080 Hb_005054_080 Hb_000392_340--Hb_005054_080 Hb_002681_200 Hb_002681_200 Hb_000392_340--Hb_002681_200 Hb_001951_130 Hb_001951_130 Hb_000392_340--Hb_001951_130 Hb_000392_340--Hb_000127_140 Hb_000832_190 Hb_000832_190 Hb_000392_340--Hb_000832_190 Hb_012305_130 Hb_012305_130 Hb_021409_080--Hb_012305_130 Hb_111985_110 Hb_111985_110 Hb_021409_080--Hb_111985_110 Hb_004627_030 Hb_004627_030 Hb_021409_080--Hb_004627_030 Hb_002110_100 Hb_002110_100 Hb_021409_080--Hb_002110_100 Hb_000110_120 Hb_000110_120 Hb_021409_080--Hb_000110_120 Hb_000060_050 Hb_000060_050 Hb_001489_110--Hb_000060_050 Hb_001353_010 Hb_001353_010 Hb_001489_110--Hb_001353_010 Hb_002995_050 Hb_002995_050 Hb_001489_110--Hb_002995_050 Hb_185255_010 Hb_185255_010 Hb_001489_110--Hb_185255_010 Hb_001269_190 Hb_001269_190 Hb_001489_110--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_001489_110--Hb_025098_010 Hb_002184_090--Hb_001195_060 Hb_002184_090--Hb_000127_140 Hb_000329_210 Hb_000329_210 Hb_002184_090--Hb_000329_210 Hb_004257_010 Hb_004257_010 Hb_002184_090--Hb_004257_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.70261 7.8762 25.097 39.2435 4.60247 13.698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.6312 29.9501 24.6199 17.7212 23.1993

CAGE analysis