Hb_004257_010

Information

Type -
Description -
Location Contig4257: 9107-17006
Sequence    

Annotation

kegg
ID rcu:RCOM_1043060
description CMP-sialic acid transporter, putative
nr
ID XP_002523445.1
description CMP-sialic acid transporter, putative [Ricinus communis]
swissprot
ID F4JN00
description CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1
trembl
ID B9SBS6
description CMP-sialic acid transporter, putative OS=Ricinus communis GN=RCOM_1043060 PE=4 SV=1
Gene Ontology
ID GO:0000139
description cmp-sialic acid transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42026: 12832-16897 , PASA_asmbl_42027: 11694-16897
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004257_010 0.0 - - CMP-sialic acid transporter, putative [Ricinus communis]
2 Hb_000329_210 0.0855432758 - - Golgi snare 12 isoform 1 [Theobroma cacao]
3 Hb_002392_010 0.0885161648 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
4 Hb_002184_090 0.0886034985 - - DNA binding protein, putative [Ricinus communis]
5 Hb_001195_060 0.0896240479 - - Protein yrdA, putative [Ricinus communis]
6 Hb_005167_010 0.0903834148 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
7 Hb_001892_070 0.0963249259 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
8 Hb_004951_060 0.0968246761 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
9 Hb_000394_180 0.0984825394 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
10 Hb_008147_090 0.1001387094 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007192_030 0.1021926577 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
12 Hb_012799_170 0.1022162231 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
13 Hb_180343_010 0.1029342578 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
14 Hb_000317_260 0.1032379931 - - unknown [Populus trichocarpa]
15 Hb_012244_010 0.1036720538 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
16 Hb_006846_150 0.1044761931 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001662_130 0.1045287805 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
18 Hb_001575_060 0.1067083768 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
19 Hb_001301_340 0.1068945656 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
20 Hb_001307_030 0.1071847939 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004257_010 Hb_004257_010 Hb_000329_210 Hb_000329_210 Hb_004257_010--Hb_000329_210 Hb_002392_010 Hb_002392_010 Hb_004257_010--Hb_002392_010 Hb_002184_090 Hb_002184_090 Hb_004257_010--Hb_002184_090 Hb_001195_060 Hb_001195_060 Hb_004257_010--Hb_001195_060 Hb_005167_010 Hb_005167_010 Hb_004257_010--Hb_005167_010 Hb_001892_070 Hb_001892_070 Hb_004257_010--Hb_001892_070 Hb_076233_040 Hb_076233_040 Hb_000329_210--Hb_076233_040 Hb_001307_030 Hb_001307_030 Hb_000329_210--Hb_001307_030 Hb_000329_210--Hb_002184_090 Hb_024128_020 Hb_024128_020 Hb_000329_210--Hb_024128_020 Hb_000617_200 Hb_000617_200 Hb_000329_210--Hb_000617_200 Hb_001946_390 Hb_001946_390 Hb_002392_010--Hb_001946_390 Hb_032920_070 Hb_032920_070 Hb_002392_010--Hb_032920_070 Hb_002110_100 Hb_002110_100 Hb_002392_010--Hb_002110_100 Hb_000185_220 Hb_000185_220 Hb_002392_010--Hb_000185_220 Hb_066842_010 Hb_066842_010 Hb_002392_010--Hb_066842_010 Hb_005601_040 Hb_005601_040 Hb_002392_010--Hb_005601_040 Hb_002184_090--Hb_001195_060 Hb_000127_140 Hb_000127_140 Hb_002184_090--Hb_000127_140 Hb_008147_090 Hb_008147_090 Hb_002184_090--Hb_008147_090 Hb_180343_010 Hb_180343_010 Hb_002184_090--Hb_180343_010 Hb_001195_060--Hb_005167_010 Hb_000920_200 Hb_000920_200 Hb_001195_060--Hb_000920_200 Hb_005765_050 Hb_005765_050 Hb_001195_060--Hb_005765_050 Hb_012799_170 Hb_012799_170 Hb_001195_060--Hb_012799_170 Hb_001195_060--Hb_000127_140 Hb_004545_110 Hb_004545_110 Hb_001195_060--Hb_004545_110 Hb_005167_010--Hb_012799_170 Hb_006132_090 Hb_006132_090 Hb_005167_010--Hb_006132_090 Hb_000080_130 Hb_000080_130 Hb_005167_010--Hb_000080_130 Hb_005167_010--Hb_004545_110 Hb_007975_060 Hb_007975_060 Hb_005167_010--Hb_007975_060 Hb_001016_100 Hb_001016_100 Hb_001892_070--Hb_001016_100 Hb_000403_070 Hb_000403_070 Hb_001892_070--Hb_000403_070 Hb_002045_060 Hb_002045_060 Hb_001892_070--Hb_002045_060 Hb_008566_030 Hb_008566_030 Hb_001892_070--Hb_008566_030 Hb_000035_480 Hb_000035_480 Hb_001892_070--Hb_000035_480 Hb_000457_290 Hb_000457_290 Hb_001892_070--Hb_000457_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.7616 1.18866 6.59873 7.47277 2.51392 2.73973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.37581 6.60041 6.20086 3.61292 7.80348

CAGE analysis