Hb_000329_210

Information

Type -
Description -
Location Contig329: 116044-118327
Sequence    

Annotation

kegg
ID tcc:TCM_005547
description Golgi snare 12 isoform 1
nr
ID XP_007052111.1
description Golgi snare 12 isoform 1 [Theobroma cacao]
swissprot
ID O22151
description Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=2
trembl
ID A0A061E1Z0
description Golgi SNAP receptor complex member 1 OS=Theobroma cacao GN=TCM_005547 PE=3 SV=1
Gene Ontology
ID GO:0000139
description golgi snap receptor complex member 1-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34506: 112194-116724 , PASA_asmbl_34507: 112194-118301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_210 0.0 - - Golgi snare 12 isoform 1 [Theobroma cacao]
2 Hb_076233_040 0.0765234345 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
3 Hb_001307_030 0.0831767969 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
4 Hb_004257_010 0.0855432758 - - CMP-sialic acid transporter, putative [Ricinus communis]
5 Hb_002184_090 0.0875837924 - - DNA binding protein, putative [Ricinus communis]
6 Hb_024128_020 0.0883507354 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
7 Hb_000617_200 0.0939301768 - - f-actin capping protein alpha, putative [Ricinus communis]
8 Hb_008841_020 0.0939448266 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
9 Hb_025098_010 0.0957218846 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_000127_140 0.0962481861 - - transporter-related family protein [Populus trichocarpa]
11 Hb_005054_210 0.0968993616 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
12 Hb_004191_020 0.0970147088 - - PREDICTED: cysteine synthase [Jatropha curcas]
13 Hb_005144_050 0.0971035924 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
14 Hb_006478_020 0.0971167427 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
15 Hb_001512_010 0.0995014328 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
16 Hb_180343_010 0.1006924819 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
17 Hb_006469_080 0.101159837 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008147_090 0.1015547843 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000483_300 0.1027689435 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
20 Hb_010931_130 0.1028048061 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]

Gene co-expression network

sample Hb_000329_210 Hb_000329_210 Hb_076233_040 Hb_076233_040 Hb_000329_210--Hb_076233_040 Hb_001307_030 Hb_001307_030 Hb_000329_210--Hb_001307_030 Hb_004257_010 Hb_004257_010 Hb_000329_210--Hb_004257_010 Hb_002184_090 Hb_002184_090 Hb_000329_210--Hb_002184_090 Hb_024128_020 Hb_024128_020 Hb_000329_210--Hb_024128_020 Hb_000617_200 Hb_000617_200 Hb_000329_210--Hb_000617_200 Hb_008841_020 Hb_008841_020 Hb_076233_040--Hb_008841_020 Hb_003126_070 Hb_003126_070 Hb_076233_040--Hb_003126_070 Hb_010883_050 Hb_010883_050 Hb_076233_040--Hb_010883_050 Hb_006420_080 Hb_006420_080 Hb_076233_040--Hb_006420_080 Hb_005054_210 Hb_005054_210 Hb_076233_040--Hb_005054_210 Hb_025098_010 Hb_025098_010 Hb_001307_030--Hb_025098_010 Hb_008566_030 Hb_008566_030 Hb_001307_030--Hb_008566_030 Hb_185255_010 Hb_185255_010 Hb_001307_030--Hb_185255_010 Hb_011249_020 Hb_011249_020 Hb_001307_030--Hb_011249_020 Hb_000297_120 Hb_000297_120 Hb_001307_030--Hb_000297_120 Hb_002392_010 Hb_002392_010 Hb_004257_010--Hb_002392_010 Hb_004257_010--Hb_002184_090 Hb_001195_060 Hb_001195_060 Hb_004257_010--Hb_001195_060 Hb_005167_010 Hb_005167_010 Hb_004257_010--Hb_005167_010 Hb_001892_070 Hb_001892_070 Hb_004257_010--Hb_001892_070 Hb_002184_090--Hb_001195_060 Hb_000127_140 Hb_000127_140 Hb_002184_090--Hb_000127_140 Hb_008147_090 Hb_008147_090 Hb_002184_090--Hb_008147_090 Hb_180343_010 Hb_180343_010 Hb_002184_090--Hb_180343_010 Hb_001004_070 Hb_001004_070 Hb_024128_020--Hb_001004_070 Hb_005144_050 Hb_005144_050 Hb_024128_020--Hb_005144_050 Hb_029879_070 Hb_029879_070 Hb_024128_020--Hb_029879_070 Hb_001366_180 Hb_001366_180 Hb_024128_020--Hb_001366_180 Hb_006478_020 Hb_006478_020 Hb_024128_020--Hb_006478_020 Hb_029510_050 Hb_029510_050 Hb_024128_020--Hb_029510_050 Hb_003050_250 Hb_003050_250 Hb_000617_200--Hb_003050_250 Hb_019113_020 Hb_019113_020 Hb_000617_200--Hb_019113_020 Hb_161175_010 Hb_161175_010 Hb_000617_200--Hb_161175_010 Hb_002503_020 Hb_002503_020 Hb_000617_200--Hb_002503_020 Hb_006442_020 Hb_006442_020 Hb_000617_200--Hb_006442_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.24375 3.03766 10.8584 18.8837 6.30727 9.71878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7609 14.3289 16.4547 8.6839 15.1516

CAGE analysis