Hb_006442_020

Information

Type -
Description -
Location Contig6442: 44754-46381
Sequence    

Annotation

kegg
ID gmx:100798454
description very-long-chain enoyl-CoA reductase-like
nr
ID XP_012084489.1
description PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
swissprot
ID Q55C17
description Very-long-chain enoyl-CoA reductase OS=Dictyostelium discoideum GN=gpsn2 PE=3 SV=1
trembl
ID A0A067K6T0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20167 PE=4 SV=1
Gene Ontology
ID GO:0005737
description very-long-chain enoyl- reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52226: 44745-46302 , PASA_asmbl_52227: 44745-46287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006442_020 0.0 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
2 Hb_000983_040 0.0973371512 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
3 Hb_000705_290 0.0976610633 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
4 Hb_000617_200 0.1125622411 - - f-actin capping protein alpha, putative [Ricinus communis]
5 Hb_161175_010 0.1199366436 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
6 Hb_002221_070 0.1238372586 - - beta-glucanase, putative [Ricinus communis]
7 Hb_011249_020 0.1243223468 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
8 Hb_000329_210 0.1279452522 - - Golgi snare 12 isoform 1 [Theobroma cacao]
9 Hb_001014_170 0.1358661081 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
10 Hb_000272_140 0.1386247453 - - Protein bem46, putative [Ricinus communis]
11 Hb_003050_250 0.1403500168 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
12 Hb_076233_040 0.1416713783 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
13 Hb_001284_030 0.1434113764 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
14 Hb_054132_010 0.1443058588 - - PREDICTED: transmembrane protein 136-like isoform X2 [Pyrus x bretschneideri]
15 Hb_003126_070 0.1449167185 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
16 Hb_003349_030 0.1452309762 - - PREDICTED: uncharacterized protein LOC105628283 [Jatropha curcas]
17 Hb_004191_020 0.1475799438 - - PREDICTED: cysteine synthase [Jatropha curcas]
18 Hb_000138_170 0.1497434395 - - putative plastid-lipid-associated protein, partial [Hevea brasiliensis]
19 Hb_003086_080 0.150721837 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
20 Hb_005144_050 0.1520317889 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_006442_020 Hb_006442_020 Hb_000983_040 Hb_000983_040 Hb_006442_020--Hb_000983_040 Hb_000705_290 Hb_000705_290 Hb_006442_020--Hb_000705_290 Hb_000617_200 Hb_000617_200 Hb_006442_020--Hb_000617_200 Hb_161175_010 Hb_161175_010 Hb_006442_020--Hb_161175_010 Hb_002221_070 Hb_002221_070 Hb_006442_020--Hb_002221_070 Hb_011249_020 Hb_011249_020 Hb_006442_020--Hb_011249_020 Hb_054132_010 Hb_054132_010 Hb_000983_040--Hb_054132_010 Hb_004191_020 Hb_004191_020 Hb_000983_040--Hb_004191_020 Hb_005144_050 Hb_005144_050 Hb_000983_040--Hb_005144_050 Hb_000337_050 Hb_000337_050 Hb_000983_040--Hb_000337_050 Hb_000983_040--Hb_000617_200 Hb_000705_290--Hb_161175_010 Hb_001136_060 Hb_001136_060 Hb_000705_290--Hb_001136_060 Hb_000272_140 Hb_000272_140 Hb_000705_290--Hb_000272_140 Hb_000042_200 Hb_000042_200 Hb_000705_290--Hb_000042_200 Hb_001284_030 Hb_001284_030 Hb_000705_290--Hb_001284_030 Hb_000329_210 Hb_000329_210 Hb_000617_200--Hb_000329_210 Hb_003050_250 Hb_003050_250 Hb_000617_200--Hb_003050_250 Hb_019113_020 Hb_019113_020 Hb_000617_200--Hb_019113_020 Hb_000617_200--Hb_161175_010 Hb_002503_020 Hb_002503_020 Hb_000617_200--Hb_002503_020 Hb_000125_210 Hb_000125_210 Hb_161175_010--Hb_000125_210 Hb_000175_030 Hb_000175_030 Hb_161175_010--Hb_000175_030 Hb_161175_010--Hb_019113_020 Hb_003849_150 Hb_003849_150 Hb_161175_010--Hb_003849_150 Hb_000673_020 Hb_000673_020 Hb_161175_010--Hb_000673_020 Hb_010883_050 Hb_010883_050 Hb_002221_070--Hb_010883_050 Hb_011360_070 Hb_011360_070 Hb_002221_070--Hb_011360_070 Hb_007009_010 Hb_007009_010 Hb_002221_070--Hb_007009_010 Hb_007904_260 Hb_007904_260 Hb_002221_070--Hb_007904_260 Hb_001439_200 Hb_001439_200 Hb_002221_070--Hb_001439_200 Hb_002221_070--Hb_161175_010 Hb_001307_030 Hb_001307_030 Hb_011249_020--Hb_001307_030 Hb_012244_010 Hb_012244_010 Hb_011249_020--Hb_012244_010 Hb_000297_120 Hb_000297_120 Hb_011249_020--Hb_000297_120 Hb_000240_030 Hb_000240_030 Hb_011249_020--Hb_000240_030 Hb_000649_140 Hb_000649_140 Hb_011249_020--Hb_000649_140 Hb_006683_070 Hb_006683_070 Hb_011249_020--Hb_006683_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.463 4.03502 16.5354 56.5608 10.5522 21.7548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.4699 48.3503 44.6087 13.5921 54.0936

CAGE analysis