Hb_001439_200

Information

Type -
Description -
Location Contig1439: 178243-180439
Sequence    

Annotation

kegg
ID rcu:RCOM_0537760
description Transmembrane protein Tmp21 precursor, putative
nr
ID XP_002530004.1
description Transmembrane protein Tmp21 precursor, putative [Ricinus communis]
swissprot
ID Q9LQY3
description Transmembrane emp24 domain-containing protein p24delta9 OS=Arabidopsis thaliana GN=At1g26690 PE=2 SV=1
trembl
ID B9SVI5
description Transmembrane protein Tmp21, putative OS=Ricinus communis GN=RCOM_0537760 PE=3 SV=1
Gene Ontology
ID GO:0016021
description transmembrane emp24 domain-containing protein p24delta9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_200 0.0 - - Transmembrane protein Tmp21 precursor, putative [Ricinus communis]
2 Hb_002221_070 0.1128660862 - - beta-glucanase, putative [Ricinus communis]
3 Hb_019516_080 0.1145929773 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000161_060 0.1221170757 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
5 Hb_006846_060 0.1247876095 - - inositol hexaphosphate kinase, putative [Ricinus communis]
6 Hb_000046_320 0.1349304218 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
7 Hb_007904_260 0.1385275155 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
8 Hb_000336_240 0.1385360898 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
9 Hb_007009_010 0.1397299081 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
10 Hb_032215_050 0.1426005135 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
11 Hb_000363_360 0.1435580547 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
12 Hb_010174_020 0.1437732934 - - protein binding protein, putative [Ricinus communis]
13 Hb_003943_040 0.1464025738 - - DNA binding protein, putative [Ricinus communis]
14 Hb_008300_010 0.1473251675 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
15 Hb_001140_060 0.1473477684 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
16 Hb_001205_150 0.1477075573 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
17 Hb_017110_010 0.1482434001 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
18 Hb_027625_010 0.1489487061 - - PREDICTED: protein sym-1-like [Jatropha curcas]
19 Hb_000085_400 0.1490116195 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
20 Hb_029866_070 0.1495392602 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]

Gene co-expression network

sample Hb_001439_200 Hb_001439_200 Hb_002221_070 Hb_002221_070 Hb_001439_200--Hb_002221_070 Hb_019516_080 Hb_019516_080 Hb_001439_200--Hb_019516_080 Hb_000161_060 Hb_000161_060 Hb_001439_200--Hb_000161_060 Hb_006846_060 Hb_006846_060 Hb_001439_200--Hb_006846_060 Hb_000046_320 Hb_000046_320 Hb_001439_200--Hb_000046_320 Hb_007904_260 Hb_007904_260 Hb_001439_200--Hb_007904_260 Hb_010883_050 Hb_010883_050 Hb_002221_070--Hb_010883_050 Hb_011360_070 Hb_011360_070 Hb_002221_070--Hb_011360_070 Hb_007009_010 Hb_007009_010 Hb_002221_070--Hb_007009_010 Hb_002221_070--Hb_007904_260 Hb_161175_010 Hb_161175_010 Hb_002221_070--Hb_161175_010 Hb_027073_050 Hb_027073_050 Hb_019516_080--Hb_027073_050 Hb_000103_320 Hb_000103_320 Hb_019516_080--Hb_000103_320 Hb_003687_150 Hb_003687_150 Hb_019516_080--Hb_003687_150 Hb_000046_100 Hb_000046_100 Hb_019516_080--Hb_000046_100 Hb_000300_220 Hb_000300_220 Hb_019516_080--Hb_000300_220 Hb_000629_120 Hb_000629_120 Hb_000161_060--Hb_000629_120 Hb_001205_150 Hb_001205_150 Hb_000161_060--Hb_001205_150 Hb_010174_020 Hb_010174_020 Hb_000161_060--Hb_010174_020 Hb_000692_220 Hb_000692_220 Hb_000161_060--Hb_000692_220 Hb_000985_060 Hb_000985_060 Hb_000161_060--Hb_000985_060 Hb_092337_010 Hb_092337_010 Hb_000161_060--Hb_092337_010 Hb_017413_010 Hb_017413_010 Hb_006846_060--Hb_017413_010 Hb_012799_160 Hb_012799_160 Hb_006846_060--Hb_012799_160 Hb_001584_190 Hb_001584_190 Hb_006846_060--Hb_001584_190 Hb_003964_100 Hb_003964_100 Hb_006846_060--Hb_003964_100 Hb_006816_210 Hb_006816_210 Hb_006846_060--Hb_006816_210 Hb_000270_370 Hb_000270_370 Hb_006846_060--Hb_000270_370 Hb_000046_320--Hb_007904_260 Hb_000985_030 Hb_000985_030 Hb_000046_320--Hb_000985_030 Hb_000777_040 Hb_000777_040 Hb_000046_320--Hb_000777_040 Hb_000749_220 Hb_000749_220 Hb_000046_320--Hb_000749_220 Hb_003177_030 Hb_003177_030 Hb_000046_320--Hb_003177_030 Hb_002998_060 Hb_002998_060 Hb_000046_320--Hb_002998_060 Hb_003053_020 Hb_003053_020 Hb_007904_260--Hb_003053_020 Hb_001512_030 Hb_001512_030 Hb_007904_260--Hb_001512_030 Hb_006117_070 Hb_006117_070 Hb_007904_260--Hb_006117_070 Hb_003697_040 Hb_003697_040 Hb_007904_260--Hb_003697_040 Hb_000638_250 Hb_000638_250 Hb_007904_260--Hb_000638_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.15553 0.167663 0.655238 3.10383 1.47135 1.79973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43471 3.774 4.14659 1.66174 1.86219

CAGE analysis