Hb_000300_220

Information

Type -
Description -
Location Contig300: 190203-193555
Sequence    

Annotation

kegg
ID tcc:TCM_025816
description DnaJ/Hsp40 cysteine-rich domain superfamily protein isoform 1
nr
ID XP_012070370.1
description PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KTU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02661 PE=4 SV=1
Gene Ontology
ID GO:0031072
description hsp40 cysteine-rich domain superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31566: 190204-193603
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_220 0.0 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
2 Hb_001008_090 0.0774660443 - - cytochrome C oxidase, putative [Ricinus communis]
3 Hb_000322_140 0.0795115119 - - hypothetical protein RCOM_1047200 [Ricinus communis]
4 Hb_011537_110 0.0883148258 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
5 Hb_068056_030 0.0917500276 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
6 Hb_011457_090 0.0932976452 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
7 Hb_183961_010 0.0938407243 - - PREDICTED: inactive rhomboid protein 1 [Cucumis sativus]
8 Hb_004659_060 0.0975463249 - - RAS-related GTP-binding family protein [Populus trichocarpa]
9 Hb_027625_010 0.0995494012 - - PREDICTED: protein sym-1-like [Jatropha curcas]
10 Hb_000260_210 0.1008939495 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001461_010 0.1032707176 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
12 Hb_020419_020 0.1039084924 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
13 Hb_006569_100 0.1050910813 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
14 Hb_000805_250 0.1106213044 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
15 Hb_000817_030 0.1119619422 - - mak, putative [Ricinus communis]
16 Hb_001519_030 0.111977212 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
17 Hb_001953_090 0.1124070068 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
18 Hb_000441_190 0.1131216444 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
19 Hb_008544_010 0.1141084439 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
20 Hb_000023_340 0.1168940366 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000300_220 Hb_000300_220 Hb_001008_090 Hb_001008_090 Hb_000300_220--Hb_001008_090 Hb_000322_140 Hb_000322_140 Hb_000300_220--Hb_000322_140 Hb_011537_110 Hb_011537_110 Hb_000300_220--Hb_011537_110 Hb_068056_030 Hb_068056_030 Hb_000300_220--Hb_068056_030 Hb_011457_090 Hb_011457_090 Hb_000300_220--Hb_011457_090 Hb_183961_010 Hb_183961_010 Hb_000300_220--Hb_183961_010 Hb_005278_040 Hb_005278_040 Hb_001008_090--Hb_005278_040 Hb_000417_260 Hb_000417_260 Hb_001008_090--Hb_000417_260 Hb_004659_060 Hb_004659_060 Hb_001008_090--Hb_004659_060 Hb_006569_100 Hb_006569_100 Hb_001008_090--Hb_006569_100 Hb_001008_090--Hb_183961_010 Hb_002878_010 Hb_002878_010 Hb_000322_140--Hb_002878_010 Hb_001953_090 Hb_001953_090 Hb_000322_140--Hb_001953_090 Hb_000322_140--Hb_004659_060 Hb_001461_010 Hb_001461_010 Hb_000322_140--Hb_001461_010 Hb_004374_140 Hb_004374_140 Hb_000322_140--Hb_004374_140 Hb_027625_010 Hb_027625_010 Hb_011537_110--Hb_027625_010 Hb_011537_110--Hb_011457_090 Hb_001235_030 Hb_001235_030 Hb_011537_110--Hb_001235_030 Hb_000224_120 Hb_000224_120 Hb_011537_110--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_011537_110--Hb_000046_290 Hb_000224_140 Hb_000224_140 Hb_068056_030--Hb_000224_140 Hb_002918_290 Hb_002918_290 Hb_068056_030--Hb_002918_290 Hb_068056_030--Hb_006569_100 Hb_001512_080 Hb_001512_080 Hb_068056_030--Hb_001512_080 Hb_005463_140 Hb_005463_140 Hb_068056_030--Hb_005463_140 Hb_068056_030--Hb_000417_260 Hb_011457_090--Hb_000224_120 Hb_001153_060 Hb_001153_060 Hb_011457_090--Hb_001153_060 Hb_000635_150 Hb_000635_150 Hb_011457_090--Hb_000635_150 Hb_004336_050 Hb_004336_050 Hb_011457_090--Hb_004336_050 Hb_183961_010--Hb_005278_040 Hb_183961_010--Hb_011457_090 Hb_183961_010--Hb_011537_110 Hb_183961_010--Hb_004659_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.2154 2.98779 11.0963 34.1983 6.82225 27.7153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.6056 66.6033 61.3266 16.4633 19.4832

CAGE analysis