Hb_001235_030

Information

Type -
Description -
Location Contig1235: 45993-54713
Sequence    

Annotation

kegg
ID vvi:100246386
description RNA-binding KH domain-containing-like
nr
ID XP_002274648.1
description PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
swissprot
ID Q9FKT4
description KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1
trembl
ID D7UAP0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g01210 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at5g56140-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07142: 46516-54626 , PASA_asmbl_07144: 49421-49679 , PASA_asmbl_07145: 50193-50388 , PASA_asmbl_07146: 50685-50882 , PASA_asmbl_07147: 52082-52510 , PASA_asmbl_07149: 51215-51360
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_030 0.0 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
2 Hb_005092_060 0.0714775579 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
3 Hb_001014_230 0.0722746609 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
4 Hb_114336_020 0.0736565833 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
5 Hb_008554_070 0.0799450862 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
6 Hb_011534_030 0.0822172092 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
7 Hb_002016_120 0.0824551099 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
8 Hb_064441_010 0.0825171162 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
9 Hb_027625_010 0.0840965664 - - PREDICTED: protein sym-1-like [Jatropha curcas]
10 Hb_000072_180 0.0840967173 - - PREDICTED: EVI5-like protein [Jatropha curcas]
11 Hb_004218_110 0.084817011 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
12 Hb_002759_060 0.0864919989 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
13 Hb_025240_040 0.0881848907 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
14 Hb_010436_060 0.0884309633 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
15 Hb_000046_290 0.0904635208 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
16 Hb_024714_010 0.0904834294 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
17 Hb_009393_210 0.0914300612 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
18 Hb_001234_100 0.0914361631 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
19 Hb_000346_040 0.09329215 - - -
20 Hb_001360_050 0.0936568254 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001235_030 Hb_001235_030 Hb_005092_060 Hb_005092_060 Hb_001235_030--Hb_005092_060 Hb_001014_230 Hb_001014_230 Hb_001235_030--Hb_001014_230 Hb_114336_020 Hb_114336_020 Hb_001235_030--Hb_114336_020 Hb_008554_070 Hb_008554_070 Hb_001235_030--Hb_008554_070 Hb_011534_030 Hb_011534_030 Hb_001235_030--Hb_011534_030 Hb_002016_120 Hb_002016_120 Hb_001235_030--Hb_002016_120 Hb_001360_050 Hb_001360_050 Hb_005092_060--Hb_001360_050 Hb_002759_060 Hb_002759_060 Hb_005092_060--Hb_002759_060 Hb_000635_150 Hb_000635_150 Hb_005092_060--Hb_000635_150 Hb_004218_110 Hb_004218_110 Hb_005092_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_005092_060--Hb_001833_110 Hb_001014_230--Hb_114336_020 Hb_001014_230--Hb_011534_030 Hb_002307_170 Hb_002307_170 Hb_001014_230--Hb_002307_170 Hb_092107_010 Hb_092107_010 Hb_001014_230--Hb_092107_010 Hb_013607_040 Hb_013607_040 Hb_001014_230--Hb_013607_040 Hb_172932_010 Hb_172932_010 Hb_114336_020--Hb_172932_010 Hb_114336_020--Hb_011534_030 Hb_001775_110 Hb_001775_110 Hb_114336_020--Hb_001775_110 Hb_000398_040 Hb_000398_040 Hb_114336_020--Hb_000398_040 Hb_027625_010 Hb_027625_010 Hb_114336_020--Hb_027625_010 Hb_024714_010 Hb_024714_010 Hb_008554_070--Hb_024714_010 Hb_008554_070--Hb_002016_120 Hb_020000_010 Hb_020000_010 Hb_008554_070--Hb_020000_010 Hb_025240_040 Hb_025240_040 Hb_008554_070--Hb_025240_040 Hb_011909_100 Hb_011909_100 Hb_008554_070--Hb_011909_100 Hb_011534_030--Hb_172932_010 Hb_000617_150 Hb_000617_150 Hb_011534_030--Hb_000617_150 Hb_003053_020 Hb_003053_020 Hb_011534_030--Hb_003053_020 Hb_019263_020 Hb_019263_020 Hb_011534_030--Hb_019263_020 Hb_009113_070 Hb_009113_070 Hb_011534_030--Hb_009113_070 Hb_001454_190 Hb_001454_190 Hb_011534_030--Hb_001454_190 Hb_002016_120--Hb_024714_010 Hb_006541_010 Hb_006541_010 Hb_002016_120--Hb_006541_010 Hb_004800_120 Hb_004800_120 Hb_002016_120--Hb_004800_120 Hb_033153_060 Hb_033153_060 Hb_002016_120--Hb_033153_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5132 8.37901 9.11013 20.4445 16.4833 34.8328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.6899 44.583 48.9781 20.3651 25.4939

CAGE analysis