Hb_002307_170

Information

Type -
Description -
Location Contig2307: 111442-128588
Sequence    

Annotation

kegg
ID rcu:RCOM_0909290
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012069757.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
swissprot
ID Q9FG93
description Probable alpha-mannosidase I MNS4 OS=Arabidopsis thaliana GN=MNS4 PE=2 SV=1
trembl
ID A0A067KVX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02270 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pentatricopeptide repeat-containing protein at4g02750-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24250: 112596-112919 , PASA_asmbl_24251: 115665-115896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_170 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
2 Hb_013607_040 0.0717985251 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
3 Hb_004846_070 0.0887867876 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
4 Hb_011534_030 0.0905168458 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
5 Hb_000479_140 0.0912782556 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
6 Hb_001014_230 0.0921255922 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
7 Hb_000471_110 0.0995219826 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
8 Hb_002585_020 0.1016134226 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Populus euphratica]
9 Hb_079312_010 0.1033357287 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001090_050 0.103598523 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
11 Hb_005162_070 0.1041969001 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001373_180 0.1048221632 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
13 Hb_007416_060 0.1051719713 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
14 Hb_172932_010 0.106145558 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000020_120 0.1068993028 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
16 Hb_001898_070 0.1073056568 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Jatropha curcas]
17 Hb_003020_220 0.1084662768 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
18 Hb_010608_050 0.110306521 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
19 Hb_001140_220 0.110550528 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_019263_020 0.1115509264 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002307_170 Hb_002307_170 Hb_013607_040 Hb_013607_040 Hb_002307_170--Hb_013607_040 Hb_004846_070 Hb_004846_070 Hb_002307_170--Hb_004846_070 Hb_011534_030 Hb_011534_030 Hb_002307_170--Hb_011534_030 Hb_000479_140 Hb_000479_140 Hb_002307_170--Hb_000479_140 Hb_001014_230 Hb_001014_230 Hb_002307_170--Hb_001014_230 Hb_000471_110 Hb_000471_110 Hb_002307_170--Hb_000471_110 Hb_019263_020 Hb_019263_020 Hb_013607_040--Hb_019263_020 Hb_001373_180 Hb_001373_180 Hb_013607_040--Hb_001373_180 Hb_002235_280 Hb_002235_280 Hb_013607_040--Hb_002235_280 Hb_013607_040--Hb_004846_070 Hb_005162_070 Hb_005162_070 Hb_013607_040--Hb_005162_070 Hb_000206_240 Hb_000206_240 Hb_004846_070--Hb_000206_240 Hb_001090_050 Hb_001090_050 Hb_004846_070--Hb_001090_050 Hb_000002_050 Hb_000002_050 Hb_004846_070--Hb_000002_050 Hb_008695_100 Hb_008695_100 Hb_004846_070--Hb_008695_100 Hb_172932_010 Hb_172932_010 Hb_011534_030--Hb_172932_010 Hb_000617_150 Hb_000617_150 Hb_011534_030--Hb_000617_150 Hb_003053_020 Hb_003053_020 Hb_011534_030--Hb_003053_020 Hb_011534_030--Hb_019263_020 Hb_009113_070 Hb_009113_070 Hb_011534_030--Hb_009113_070 Hb_001454_190 Hb_001454_190 Hb_011534_030--Hb_001454_190 Hb_000479_140--Hb_000471_110 Hb_000406_130 Hb_000406_130 Hb_000479_140--Hb_000406_130 Hb_000020_120 Hb_000020_120 Hb_000479_140--Hb_000020_120 Hb_001242_130 Hb_001242_130 Hb_000479_140--Hb_001242_130 Hb_010344_050 Hb_010344_050 Hb_000479_140--Hb_010344_050 Hb_000497_300 Hb_000497_300 Hb_000479_140--Hb_000497_300 Hb_001235_030 Hb_001235_030 Hb_001014_230--Hb_001235_030 Hb_114336_020 Hb_114336_020 Hb_001014_230--Hb_114336_020 Hb_001014_230--Hb_011534_030 Hb_092107_010 Hb_092107_010 Hb_001014_230--Hb_092107_010 Hb_001014_230--Hb_013607_040 Hb_000471_110--Hb_000406_130 Hb_000116_260 Hb_000116_260 Hb_000471_110--Hb_000116_260 Hb_001352_020 Hb_001352_020 Hb_000471_110--Hb_001352_020 Hb_000471_110--Hb_000497_300 Hb_164010_030 Hb_164010_030 Hb_000471_110--Hb_164010_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.541699 0.60938 0.300382 0.632031 0.505876 1.05841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.885354 1.61298 2.41623 0.93796 1.49076

CAGE analysis