Hb_010344_050

Information

Type -
Description -
Location Contig10344: 49471-56295
Sequence    

Annotation

kegg
ID rcu:RCOM_0545900
description hypothetical protein
nr
ID KHG06250.1
description Adagio 1 -like protein [Gossypium arboreum]
swissprot
ID Q94BT6
description Adagio protein 1 OS=Arabidopsis thaliana GN=ADO1 PE=1 SV=2
trembl
ID A0A0B0MZR4
description Adagio 1-like protein OS=Gossypium arboreum GN=F383_32374 PE=4 SV=1
Gene Ontology
ID GO:0005634
description adagio protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01351: 49338-56299 , PASA_asmbl_01352: 55260-55379
cDNA
(Sanger)
(ID:Location)		 048_D15.ab1: 50990-56299

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010344_050 0.0 - - Adagio 1 -like protein [Gossypium arboreum]
2 Hb_000497_300 0.0540782728 - - peroxisomal membrane protein [Hevea brasiliensis]
3 Hb_004712_130 0.0663422 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
4 Hb_001352_020 0.0740403603 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
5 Hb_007044_050 0.0797862553 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
6 Hb_007386_040 0.0801632356 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
7 Hb_000505_150 0.0817669648 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
8 Hb_000471_110 0.0872834702 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
9 Hb_000116_260 0.0874498571 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
10 Hb_000406_130 0.0875768149 - - vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_001789_150 0.087662402 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
12 Hb_000479_140 0.0904151271 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
13 Hb_000008_440 0.090579528 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
14 Hb_000406_140 0.0913532506 - - conserved hypothetical protein [Ricinus communis]
15 Hb_164010_030 0.0920879534 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
16 Hb_001999_090 0.0930865007 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
17 Hb_032202_040 0.096658762 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
18 Hb_001242_130 0.0971284998 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
19 Hb_000913_020 0.0977094604 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
20 Hb_000454_090 0.0980372367 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]

Gene co-expression network

sample Hb_010344_050 Hb_010344_050 Hb_000497_300 Hb_000497_300 Hb_010344_050--Hb_000497_300 Hb_004712_130 Hb_004712_130 Hb_010344_050--Hb_004712_130 Hb_001352_020 Hb_001352_020 Hb_010344_050--Hb_001352_020 Hb_007044_050 Hb_007044_050 Hb_010344_050--Hb_007044_050 Hb_007386_040 Hb_007386_040 Hb_010344_050--Hb_007386_040 Hb_000505_150 Hb_000505_150 Hb_010344_050--Hb_000505_150 Hb_000497_300--Hb_004712_130 Hb_000497_300--Hb_001352_020 Hb_000116_260 Hb_000116_260 Hb_000497_300--Hb_000116_260 Hb_164010_030 Hb_164010_030 Hb_000497_300--Hb_164010_030 Hb_001789_150 Hb_001789_150 Hb_000497_300--Hb_001789_150 Hb_001999_090 Hb_001999_090 Hb_004712_130--Hb_001999_090 Hb_027472_070 Hb_027472_070 Hb_004712_130--Hb_027472_070 Hb_000094_070 Hb_000094_070 Hb_004712_130--Hb_000094_070 Hb_000366_040 Hb_000366_040 Hb_004712_130--Hb_000366_040 Hb_001352_020--Hb_000116_260 Hb_000406_130 Hb_000406_130 Hb_001352_020--Hb_000406_130 Hb_001352_020--Hb_001789_150 Hb_000471_110 Hb_000471_110 Hb_001352_020--Hb_000471_110 Hb_004993_060 Hb_004993_060 Hb_007044_050--Hb_004993_060 Hb_007044_050--Hb_001352_020 Hb_007044_050--Hb_000505_150 Hb_001898_080 Hb_001898_080 Hb_007044_050--Hb_001898_080 Hb_007044_050--Hb_007386_040 Hb_000252_100 Hb_000252_100 Hb_007386_040--Hb_000252_100 Hb_007386_040--Hb_000505_150 Hb_000012_310 Hb_000012_310 Hb_007386_040--Hb_000012_310 Hb_000454_090 Hb_000454_090 Hb_007386_040--Hb_000454_090 Hb_000109_180 Hb_000109_180 Hb_007386_040--Hb_000109_180 Hb_000505_150--Hb_000252_100 Hb_000140_380 Hb_000140_380 Hb_000505_150--Hb_000140_380 Hb_000853_200 Hb_000853_200 Hb_000505_150--Hb_000853_200 Hb_000505_150--Hb_001898_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3795 18.6176 11.7995 25.959 9.00427 12.7933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3451 19.4827 40.4447 21.6224 29.5171

CAGE analysis