Hb_000109_180

Information

Type -
Description -
Location Contig109: 254650-270015
Sequence    

Annotation

kegg
ID rcu:RCOM_0993500
description AP-1 complex subunit gamma-2, putative
nr
ID XP_012092070.1
description PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
swissprot
ID Q9ZUI6
description AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070 PE=1 SV=2
trembl
ID A0A067JMU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21796 PE=4 SV=1
Gene Ontology
ID GO:0005794
description ap-1 complex subunit gamma-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02724: 254711-268339 , PASA_asmbl_02725: 260317-260669 , PASA_asmbl_02726: 268340-270117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_180 0.0 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
2 Hb_008748_030 0.0737016679 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006059_010 0.0737024208 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
4 Hb_000012_310 0.0752518668 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
5 Hb_000227_160 0.0755450662 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
6 Hb_000363_040 0.0770617885 - - Protein transport protein Sec24A, putative [Ricinus communis]
7 Hb_005305_050 0.078921165 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
8 Hb_000120_080 0.0811331794 - - PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX1 [Jatropha curcas]
9 Hb_006452_120 0.0835968386 - - PREDICTED: protein FAM188A [Jatropha curcas]
10 Hb_020178_040 0.0846118318 - - conserved hypothetical protein [Ricinus communis]
11 Hb_016347_010 0.0871049896 - - protein transporter, putative [Ricinus communis]
12 Hb_007386_040 0.087679359 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
13 Hb_000535_050 0.0881949824 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
14 Hb_001586_030 0.0882144384 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
15 Hb_002042_050 0.0888840788 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
16 Hb_002471_090 0.0894629955 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
17 Hb_002272_030 0.0902537419 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
18 Hb_011883_020 0.090683843 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
19 Hb_001789_150 0.0907112381 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
20 Hb_000841_050 0.0922319876 - - hypothetical protein L484_019972 [Morus notabilis]

Gene co-expression network

sample Hb_000109_180 Hb_000109_180 Hb_008748_030 Hb_008748_030 Hb_000109_180--Hb_008748_030 Hb_006059_010 Hb_006059_010 Hb_000109_180--Hb_006059_010 Hb_000012_310 Hb_000012_310 Hb_000109_180--Hb_000012_310 Hb_000227_160 Hb_000227_160 Hb_000109_180--Hb_000227_160 Hb_000363_040 Hb_000363_040 Hb_000109_180--Hb_000363_040 Hb_005305_050 Hb_005305_050 Hb_000109_180--Hb_005305_050 Hb_008748_030--Hb_000227_160 Hb_008748_030--Hb_000012_310 Hb_006452_120 Hb_006452_120 Hb_008748_030--Hb_006452_120 Hb_000574_450 Hb_000574_450 Hb_008748_030--Hb_000574_450 Hb_028487_160 Hb_028487_160 Hb_008748_030--Hb_028487_160 Hb_000778_010 Hb_000778_010 Hb_008748_030--Hb_000778_010 Hb_000185_220 Hb_000185_220 Hb_006059_010--Hb_000185_220 Hb_006059_010--Hb_000012_310 Hb_002660_170 Hb_002660_170 Hb_006059_010--Hb_002660_170 Hb_006059_010--Hb_008748_030 Hb_000297_120 Hb_000297_120 Hb_006059_010--Hb_000297_120 Hb_000012_310--Hb_006452_120 Hb_001789_150 Hb_001789_150 Hb_000012_310--Hb_001789_150 Hb_000012_310--Hb_000574_450 Hb_000012_310--Hb_002660_170 Hb_000227_160--Hb_028487_160 Hb_012262_030 Hb_012262_030 Hb_000227_160--Hb_012262_030 Hb_000367_090 Hb_000367_090 Hb_000227_160--Hb_000367_090 Hb_008289_040 Hb_008289_040 Hb_000227_160--Hb_008289_040 Hb_000029_190 Hb_000029_190 Hb_000227_160--Hb_000029_190 Hb_016347_010 Hb_016347_010 Hb_000363_040--Hb_016347_010 Hb_002908_050 Hb_002908_050 Hb_000363_040--Hb_002908_050 Hb_000363_040--Hb_005305_050 Hb_004677_050 Hb_004677_050 Hb_000363_040--Hb_004677_050 Hb_000976_100 Hb_000976_100 Hb_000363_040--Hb_000976_100 Hb_005305_050--Hb_016347_010 Hb_000984_170 Hb_000984_170 Hb_005305_050--Hb_000984_170 Hb_003544_050 Hb_003544_050 Hb_005305_050--Hb_003544_050 Hb_005305_050--Hb_002908_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.77324 12.8873 12.1474 19.5251 6.57252 7.74728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.87765 10.009 18.5029 20.0835 16.5839

CAGE analysis