Hb_002660_170

Information

Type -
Description -
Location Contig2660: 142713-150033
Sequence    

Annotation

kegg
ID pmum:103342121
description probable catabolite repression protein creC
nr
ID XP_012082341.1
description PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
swissprot
ID Q4WN25
description Probable catabolite repression protein creC OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=creC PE=3 SV=2
trembl
ID A0A067KBB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16493 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27800: 142705-149888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_170 0.0 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
2 Hb_000025_190 0.0667451235 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
3 Hb_007218_120 0.0676461242 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
4 Hb_006059_010 0.069455339 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
5 Hb_000060_050 0.0705743526 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
6 Hb_000012_310 0.0722235729 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
7 Hb_002477_290 0.078330372 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
8 Hb_000297_120 0.0784134408 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
9 Hb_004880_150 0.0824534216 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
10 Hb_003376_180 0.0865195568 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
11 Hb_032920_070 0.0873131623 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
12 Hb_003305_040 0.0876066912 - - AP47/50p mRNA family protein [Populus trichocarpa]
13 Hb_000110_140 0.0884199562 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
14 Hb_005653_070 0.0891091197 - - K+ transport growth defect-like protein [Hevea brasiliensis]
15 Hb_002811_100 0.0918117292 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
16 Hb_007386_040 0.0919697784 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
17 Hb_008748_030 0.0925746466 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000252_100 0.0944771858 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
19 Hb_000185_220 0.095277526 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
20 Hb_000841_050 0.0955139521 - - hypothetical protein L484_019972 [Morus notabilis]

Gene co-expression network

sample Hb_002660_170 Hb_002660_170 Hb_000025_190 Hb_000025_190 Hb_002660_170--Hb_000025_190 Hb_007218_120 Hb_007218_120 Hb_002660_170--Hb_007218_120 Hb_006059_010 Hb_006059_010 Hb_002660_170--Hb_006059_010 Hb_000060_050 Hb_000060_050 Hb_002660_170--Hb_000060_050 Hb_000012_310 Hb_000012_310 Hb_002660_170--Hb_000012_310 Hb_002477_290 Hb_002477_290 Hb_002660_170--Hb_002477_290 Hb_062537_010 Hb_062537_010 Hb_000025_190--Hb_062537_010 Hb_004880_150 Hb_004880_150 Hb_000025_190--Hb_004880_150 Hb_005648_010 Hb_005648_010 Hb_000025_190--Hb_005648_010 Hb_003988_050 Hb_003988_050 Hb_000025_190--Hb_003988_050 Hb_000115_150 Hb_000115_150 Hb_000025_190--Hb_000115_150 Hb_002119_130 Hb_002119_130 Hb_007218_120--Hb_002119_130 Hb_000173_410 Hb_000173_410 Hb_007218_120--Hb_000173_410 Hb_000110_140 Hb_000110_140 Hb_007218_120--Hb_000110_140 Hb_003360_040 Hb_003360_040 Hb_007218_120--Hb_003360_040 Hb_003376_180 Hb_003376_180 Hb_007218_120--Hb_003376_180 Hb_000185_220 Hb_000185_220 Hb_006059_010--Hb_000185_220 Hb_006059_010--Hb_000012_310 Hb_000109_180 Hb_000109_180 Hb_006059_010--Hb_000109_180 Hb_008748_030 Hb_008748_030 Hb_006059_010--Hb_008748_030 Hb_000297_120 Hb_000297_120 Hb_006059_010--Hb_000297_120 Hb_003305_040 Hb_003305_040 Hb_000060_050--Hb_003305_040 Hb_001489_110 Hb_001489_110 Hb_000060_050--Hb_001489_110 Hb_000212_450 Hb_000212_450 Hb_000060_050--Hb_000212_450 Hb_000252_100 Hb_000252_100 Hb_000060_050--Hb_000252_100 Hb_000060_050--Hb_000173_410 Hb_000012_310--Hb_008748_030 Hb_006452_120 Hb_006452_120 Hb_000012_310--Hb_006452_120 Hb_001789_150 Hb_001789_150 Hb_000012_310--Hb_001789_150 Hb_000574_450 Hb_000574_450 Hb_000012_310--Hb_000574_450 Hb_002477_290--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_002477_290--Hb_000841_050 Hb_002477_290--Hb_007218_120 Hb_000251_030 Hb_000251_030 Hb_002477_290--Hb_000251_030 Hb_002477_290--Hb_006059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.82831 7.8358 7.11977 18.1598 3.46185 6.28958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.59658 13.1079 11.9885 13.8204 12.4083

CAGE analysis