Hb_000251_030

Information

Type -
Description -
Location Contig251: 52070-56724
Sequence    

Annotation

kegg
ID rcu:RCOM_1409980
description nicotinate phosphoribosyltransferase, putative
nr
ID XP_002523612.1
description nicotinate phosphoribosyltransferase, putative [Ricinus communis]
swissprot
ID Q84WV8
description Nicotinate phosphoribosyltransferase 2 OS=Arabidopsis thaliana GN=NAPRT2 PE=2 SV=1
trembl
ID B9SC93
description Nicotinate phosphoribosyltransferase, putative OS=Ricinus communis GN=RCOM_1409980 PE=4 SV=1
Gene Ontology
ID GO:0004514
description nicotinate phosphoribosyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26218: 47660-56723 , PASA_asmbl_26219: 53479-56550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000251_030 0.0 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
2 Hb_002477_290 0.0787449832 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
3 Hb_007218_120 0.0888990802 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
4 Hb_001728_140 0.091375811 - - -
5 Hb_003376_180 0.0919661567 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
6 Hb_006059_010 0.0958019033 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
7 Hb_000548_070 0.0987335092 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
8 Hb_004880_150 0.1000472208 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
9 Hb_000684_040 0.1002979797 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
10 Hb_000035_390 0.1043908148 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
11 Hb_000109_180 0.1044038612 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
12 Hb_001510_020 0.1046257984 - - Diaminopimelate epimerase, putative [Ricinus communis]
13 Hb_001221_020 0.1049438286 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
14 Hb_001493_150 0.1052303274 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
15 Hb_002660_170 0.1056020957 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
16 Hb_100147_010 0.1056457075 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
17 Hb_000381_110 0.1075180201 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X2 [Jatropha curcas]
18 Hb_094970_010 0.1094441099 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
19 Hb_002119_130 0.1104923413 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
20 Hb_009615_060 0.11114028 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000251_030 Hb_000251_030 Hb_002477_290 Hb_002477_290 Hb_000251_030--Hb_002477_290 Hb_007218_120 Hb_007218_120 Hb_000251_030--Hb_007218_120 Hb_001728_140 Hb_001728_140 Hb_000251_030--Hb_001728_140 Hb_003376_180 Hb_003376_180 Hb_000251_030--Hb_003376_180 Hb_006059_010 Hb_006059_010 Hb_000251_030--Hb_006059_010 Hb_000548_070 Hb_000548_070 Hb_000251_030--Hb_000548_070 Hb_004880_150 Hb_004880_150 Hb_002477_290--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_002477_290--Hb_000841_050 Hb_002660_170 Hb_002660_170 Hb_002477_290--Hb_002660_170 Hb_002477_290--Hb_007218_120 Hb_002477_290--Hb_006059_010 Hb_002119_130 Hb_002119_130 Hb_007218_120--Hb_002119_130 Hb_000173_410 Hb_000173_410 Hb_007218_120--Hb_000173_410 Hb_007218_120--Hb_002660_170 Hb_000110_140 Hb_000110_140 Hb_007218_120--Hb_000110_140 Hb_003360_040 Hb_003360_040 Hb_007218_120--Hb_003360_040 Hb_007218_120--Hb_003376_180 Hb_001728_140--Hb_000548_070 Hb_009615_060 Hb_009615_060 Hb_001728_140--Hb_009615_060 Hb_001493_150 Hb_001493_150 Hb_001728_140--Hb_001493_150 Hb_001510_020 Hb_001510_020 Hb_001728_140--Hb_001510_020 Hb_001728_140--Hb_002477_290 Hb_003376_180--Hb_000110_140 Hb_003376_180--Hb_002477_290 Hb_005653_070 Hb_005653_070 Hb_003376_180--Hb_005653_070 Hb_003376_180--Hb_002660_170 Hb_001728_040 Hb_001728_040 Hb_003376_180--Hb_001728_040 Hb_000185_220 Hb_000185_220 Hb_006059_010--Hb_000185_220 Hb_000012_310 Hb_000012_310 Hb_006059_010--Hb_000012_310 Hb_006059_010--Hb_002660_170 Hb_000109_180 Hb_000109_180 Hb_006059_010--Hb_000109_180 Hb_008748_030 Hb_008748_030 Hb_006059_010--Hb_008748_030 Hb_000297_120 Hb_000297_120 Hb_006059_010--Hb_000297_120 Hb_000548_070--Hb_009615_060 Hb_003044_080 Hb_003044_080 Hb_000548_070--Hb_003044_080 Hb_000548_070--Hb_001510_020 Hb_000800_090 Hb_000800_090 Hb_000548_070--Hb_000800_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09663 4.53911 4.43267 7.83366 1.8614 1.3267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.62493 5.8681 6.40814 10.2832 6.52179

CAGE analysis