Hb_003044_080

Information

Type desease resistance
Description Gene Name: Synthase_beta
Location Contig3044: 93904-98356
Sequence    

Annotation

kegg
ID pmum:103341553
description ATP synthase subunit beta, mitochondrial-like
nr
ID P29685.1
description RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
swissprot
ID P29685
description ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1
trembl
ID A0A067KFH8
description ATP synthase subunit beta OS=Jatropha curcas GN=JCGZ_09279 PE=3 SV=1
Gene Ontology
ID GO:0000275
description atp synthase subunit mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32104: 93934-98295 , PASA_asmbl_32106: 95372-95470
cDNA
(Sanger)
(ID:Location)		 009_J19.ab1: 93934-95813 , 022_I11.ab1: 93998-94178 , 036_F06.ab1: 93934-95792

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003044_080 0.0 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
2 Hb_000548_070 0.0779328123 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
3 Hb_000800_090 0.101577027 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
4 Hb_009615_060 0.104850611 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
5 Hb_001728_140 0.1090669675 - - -
6 Hb_002631_130 0.1120141764 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
7 Hb_000950_010 0.1124137366 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
8 Hb_177215_030 0.1181070915 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
9 Hb_002876_270 0.1190018127 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
10 Hb_000494_030 0.1208203425 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
11 Hb_010390_010 0.1211274958 - - casein kinase, putative [Ricinus communis]
12 Hb_001623_190 0.1229887867 - - PREDICTED: uncharacterized protein LOC105638473 [Jatropha curcas]
13 Hb_000853_200 0.1230322313 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
14 Hb_000181_460 0.1230381554 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
15 Hb_003517_070 0.1243089189 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
16 Hb_021943_090 0.12472816 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
17 Hb_000109_180 0.1250490129 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
18 Hb_006059_010 0.1251443128 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
19 Hb_001586_030 0.1251642964 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
20 Hb_000215_280 0.127463075 - - Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003044_080 Hb_003044_080 Hb_000548_070 Hb_000548_070 Hb_003044_080--Hb_000548_070 Hb_000800_090 Hb_000800_090 Hb_003044_080--Hb_000800_090 Hb_009615_060 Hb_009615_060 Hb_003044_080--Hb_009615_060 Hb_001728_140 Hb_001728_140 Hb_003044_080--Hb_001728_140 Hb_002631_130 Hb_002631_130 Hb_003044_080--Hb_002631_130 Hb_000950_010 Hb_000950_010 Hb_003044_080--Hb_000950_010 Hb_000548_070--Hb_001728_140 Hb_000548_070--Hb_009615_060 Hb_001510_020 Hb_001510_020 Hb_000548_070--Hb_001510_020 Hb_000548_070--Hb_000800_090 Hb_000251_030 Hb_000251_030 Hb_000548_070--Hb_000251_030 Hb_005701_120 Hb_005701_120 Hb_000800_090--Hb_005701_120 Hb_000025_190 Hb_000025_190 Hb_000800_090--Hb_000025_190 Hb_001946_310 Hb_001946_310 Hb_000800_090--Hb_001946_310 Hb_004046_030 Hb_004046_030 Hb_000800_090--Hb_004046_030 Hb_000185_220 Hb_000185_220 Hb_000800_090--Hb_000185_220 Hb_005648_010 Hb_005648_010 Hb_000800_090--Hb_005648_010 Hb_001493_150 Hb_001493_150 Hb_009615_060--Hb_001493_150 Hb_009615_060--Hb_001728_140 Hb_003159_050 Hb_003159_050 Hb_009615_060--Hb_003159_050 Hb_009615_060--Hb_002631_130 Hb_012393_030 Hb_012393_030 Hb_009615_060--Hb_012393_030 Hb_001728_140--Hb_001493_150 Hb_001728_140--Hb_000251_030 Hb_001728_140--Hb_001510_020 Hb_002477_290 Hb_002477_290 Hb_001728_140--Hb_002477_290 Hb_000197_190 Hb_000197_190 Hb_002631_130--Hb_000197_190 Hb_000494_030 Hb_000494_030 Hb_002631_130--Hb_000494_030 Hb_000768_160 Hb_000768_160 Hb_002631_130--Hb_000768_160 Hb_000683_050 Hb_000683_050 Hb_002631_130--Hb_000683_050 Hb_002631_130--Hb_000548_070 Hb_006277_010 Hb_006277_010 Hb_000950_010--Hb_006277_010 Hb_002908_060 Hb_002908_060 Hb_000950_010--Hb_002908_060 Hb_000976_100 Hb_000976_100 Hb_000950_010--Hb_000976_100 Hb_000950_010--Hb_004046_030 Hb_000327_160 Hb_000327_160 Hb_000950_010--Hb_000327_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.1237 39.7699 56.9809 135.958 19.8076 23.5207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.3662 35.6592 97.97 131.807 101.594

CAGE analysis