Hb_002908_060

Information

Type -
Description -
Location Contig2908: 79621-86009
Sequence    

Annotation

kegg
ID -
description -
nr
ID CDP19180.1
description unnamed protein product, partial [Coffea canephora]
swissprot
ID -
description -
trembl
ID M0XDK3
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0005694
description dna gyrase subunit chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30459: 62914-110837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002908_060 0.0 - - unnamed protein product, partial [Coffea canephora]
2 Hb_000950_010 0.1097887495 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
3 Hb_000053_060 0.1179216673 - - hypothetical protein VITISV_022618 [Vitis vinifera]
4 Hb_001673_100 0.121852944 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
5 Hb_004870_040 0.1261696412 - - -
6 Hb_007383_020 0.130066919 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003098_080 0.1358535627 - - -
8 Hb_163975_010 0.1365177808 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
9 Hb_012678_020 0.1407926879 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
10 Hb_084670_010 0.1444667431 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_006277_010 0.1449142586 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
12 Hb_000525_090 0.1491916081 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
13 Hb_000392_160 0.1499634159 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
14 Hb_001221_340 0.1499776982 - - hypothetical protein EUGRSUZ_B00102 [Eucalyptus grandis]
15 Hb_009615_060 0.1500256734 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
16 Hb_001318_050 0.1504461453 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
17 Hb_004046_030 0.1517060411 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
18 Hb_000800_090 0.1533370113 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
19 Hb_000768_160 0.1536172301 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
20 Hb_000548_070 0.1550699536 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]

Gene co-expression network

sample Hb_002908_060 Hb_002908_060 Hb_000950_010 Hb_000950_010 Hb_002908_060--Hb_000950_010 Hb_000053_060 Hb_000053_060 Hb_002908_060--Hb_000053_060 Hb_001673_100 Hb_001673_100 Hb_002908_060--Hb_001673_100 Hb_004870_040 Hb_004870_040 Hb_002908_060--Hb_004870_040 Hb_007383_020 Hb_007383_020 Hb_002908_060--Hb_007383_020 Hb_003098_080 Hb_003098_080 Hb_002908_060--Hb_003098_080 Hb_006277_010 Hb_006277_010 Hb_000950_010--Hb_006277_010 Hb_003044_080 Hb_003044_080 Hb_000950_010--Hb_003044_080 Hb_000976_100 Hb_000976_100 Hb_000950_010--Hb_000976_100 Hb_004046_030 Hb_004046_030 Hb_000950_010--Hb_004046_030 Hb_000327_160 Hb_000327_160 Hb_000950_010--Hb_000327_160 Hb_098315_080 Hb_098315_080 Hb_000053_060--Hb_098315_080 Hb_007023_030 Hb_007023_030 Hb_000053_060--Hb_007023_030 Hb_000183_030 Hb_000183_030 Hb_000053_060--Hb_000183_030 Hb_004411_060 Hb_004411_060 Hb_000053_060--Hb_004411_060 Hb_052764_110 Hb_052764_110 Hb_000053_060--Hb_052764_110 Hb_002631_130 Hb_002631_130 Hb_001673_100--Hb_002631_130 Hb_000548_070 Hb_000548_070 Hb_001673_100--Hb_000548_070 Hb_001673_100--Hb_003098_080 Hb_001673_100--Hb_000950_010 Hb_001673_100--Hb_004870_040 Hb_022593_010 Hb_022593_010 Hb_004870_040--Hb_022593_010 Hb_000946_110 Hb_000946_110 Hb_004870_040--Hb_000946_110 Hb_023827_020 Hb_023827_020 Hb_004870_040--Hb_023827_020 Hb_009711_050 Hb_009711_050 Hb_004870_040--Hb_009711_050 Hb_001318_050 Hb_001318_050 Hb_007383_020--Hb_001318_050 Hb_005648_010 Hb_005648_010 Hb_007383_020--Hb_005648_010 Hb_000025_190 Hb_000025_190 Hb_007383_020--Hb_000025_190 Hb_012678_020 Hb_012678_020 Hb_007383_020--Hb_012678_020 Hb_000800_090 Hb_000800_090 Hb_007383_020--Hb_000800_090 Hb_000115_150 Hb_000115_150 Hb_007383_020--Hb_000115_150 Hb_001452_210 Hb_001452_210 Hb_003098_080--Hb_001452_210 Hb_003098_080--Hb_001318_050 Hb_002539_020 Hb_002539_020 Hb_003098_080--Hb_002539_020 Hb_003098_080--Hb_007383_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.696846 1.3392 1.32173 6.05702 1.47484 3.01162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79184 2.92357 4.02211 8.47567 8.26928

CAGE analysis