Hb_000053_060

Information

Type -
Description -
Location Contig53: 113213-116866
Sequence    

Annotation

kegg
ID mdm:103413159
description uncharacterized LOC103413159
nr
ID CAN64735.1
description hypothetical protein VITISV_022618 [Vitis vinifera]
swissprot
ID Q5VZ89
description DENN domain-containing protein 4C OS=Homo sapiens GN=DENND4C PE=1 SV=2
trembl
ID A5AMT0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022618 PE=4 SV=1
Gene Ontology
ID GO:0080008
description stomatal cytokinesis-defective 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47290: 84757-116794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000053_060 0.0 - - hypothetical protein VITISV_022618 [Vitis vinifera]
2 Hb_098315_080 0.097334685 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
3 Hb_007023_030 0.1051841837 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
4 Hb_002908_060 0.1179216673 - - unnamed protein product, partial [Coffea canephora]
5 Hb_000183_030 0.1268502864 - - PREDICTED: probable zinc transporter protein DDB_G0291141 [Populus euphratica]
6 Hb_004411_060 0.1280117086 - - acetolactate synthase, putative [Ricinus communis]
7 Hb_052764_110 0.1299055863 - - PREDICTED: quinone oxidoreductase PIG3 isoform X1 [Jatropha curcas]
8 Hb_000976_100 0.1307273501 - - eukaryotic translation elongation factor, putative [Ricinus communis]
9 Hb_002338_050 0.1312939749 - - PREDICTED: uncharacterized protein LOC105118489 isoform X1 [Populus euphratica]
10 Hb_004480_100 0.1335069312 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
11 Hb_002768_060 0.1376014535 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
12 Hb_163975_010 0.1385808478 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
13 Hb_019337_020 0.1386314634 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
14 Hb_006909_010 0.1389387748 - - 5-oxoprolinase, putative [Ricinus communis]
15 Hb_084670_010 0.1396023888 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000062_450 0.1398536429 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]
17 Hb_001452_210 0.1401026975 - - molybdopterin biosynthesis CNX1 protein [Arabidopsis thaliana]
18 Hb_000358_050 0.1406428574 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
19 Hb_000392_160 0.1409846402 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
20 Hb_007558_100 0.1421925124 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000053_060 Hb_000053_060 Hb_098315_080 Hb_098315_080 Hb_000053_060--Hb_098315_080 Hb_007023_030 Hb_007023_030 Hb_000053_060--Hb_007023_030 Hb_002908_060 Hb_002908_060 Hb_000053_060--Hb_002908_060 Hb_000183_030 Hb_000183_030 Hb_000053_060--Hb_000183_030 Hb_004411_060 Hb_004411_060 Hb_000053_060--Hb_004411_060 Hb_052764_110 Hb_052764_110 Hb_000053_060--Hb_052764_110 Hb_098315_080--Hb_007023_030 Hb_098315_080--Hb_004411_060 Hb_004449_080 Hb_004449_080 Hb_098315_080--Hb_004449_080 Hb_006909_010 Hb_006909_010 Hb_098315_080--Hb_006909_010 Hb_001452_210 Hb_001452_210 Hb_098315_080--Hb_001452_210 Hb_002768_060 Hb_002768_060 Hb_007023_030--Hb_002768_060 Hb_004480_100 Hb_004480_100 Hb_007023_030--Hb_004480_100 Hb_000789_200 Hb_000789_200 Hb_007023_030--Hb_000789_200 Hb_000656_010 Hb_000656_010 Hb_007023_030--Hb_000656_010 Hb_003467_030 Hb_003467_030 Hb_007023_030--Hb_003467_030 Hb_001876_010 Hb_001876_010 Hb_007023_030--Hb_001876_010 Hb_000950_010 Hb_000950_010 Hb_002908_060--Hb_000950_010 Hb_001673_100 Hb_001673_100 Hb_002908_060--Hb_001673_100 Hb_004870_040 Hb_004870_040 Hb_002908_060--Hb_004870_040 Hb_007383_020 Hb_007383_020 Hb_002908_060--Hb_007383_020 Hb_003098_080 Hb_003098_080 Hb_002908_060--Hb_003098_080 Hb_000484_010 Hb_000484_010 Hb_000183_030--Hb_000484_010 Hb_000392_160 Hb_000392_160 Hb_000183_030--Hb_000392_160 Hb_000941_150 Hb_000941_150 Hb_000183_030--Hb_000941_150 Hb_001865_070 Hb_001865_070 Hb_000183_030--Hb_001865_070 Hb_002025_030 Hb_002025_030 Hb_000183_030--Hb_002025_030 Hb_015292_060 Hb_015292_060 Hb_000183_030--Hb_015292_060 Hb_164898_010 Hb_164898_010 Hb_004411_060--Hb_164898_010 Hb_004411_060--Hb_006909_010 Hb_002005_100 Hb_002005_100 Hb_004411_060--Hb_002005_100 Hb_025193_040 Hb_025193_040 Hb_004411_060--Hb_025193_040 Hb_003747_020 Hb_003747_020 Hb_004411_060--Hb_003747_020 Hb_052764_110--Hb_001452_210 Hb_052764_110--Hb_007023_030 Hb_004785_080 Hb_004785_080 Hb_052764_110--Hb_004785_080 Hb_002338_050 Hb_002338_050 Hb_052764_110--Hb_002338_050 Hb_052764_110--Hb_098315_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.460473 0.789811 0.205632 1.57299 0.676869 1.54037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.756411 0.892037 1.28017 2.48714 2.60261

CAGE analysis