Hb_052764_110

Information

Type -
Description -
Location Contig52764: 67081-68823
Sequence    

Annotation

kegg
ID pop:POPTR_0004s03620g
description POPTRDRAFT_647716; oxidoreductase family protein
nr
ID XP_012091519.1
description PREDICTED: quinone oxidoreductase PIG3 isoform X1 [Jatropha curcas]
swissprot
ID Q53FA7
description Quinone oxidoreductase PIG3 OS=Homo sapiens GN=TP53I3 PE=1 SV=2
trembl
ID A0A067JAR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21372 PE=4 SV=1
Gene Ontology
ID GO:0005829
description quinone oxidoreductase pig3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47127: 67115-68566
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052764_110 0.0 - - PREDICTED: quinone oxidoreductase PIG3 isoform X1 [Jatropha curcas]
2 Hb_001452_210 0.1110030593 - - molybdopterin biosynthesis CNX1 protein [Arabidopsis thaliana]
3 Hb_007023_030 0.1249461203 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
4 Hb_004785_080 0.1259999164 - - hypothetical protein POPTR_0005s21250g [Populus trichocarpa]
5 Hb_002338_050 0.1297089326 - - PREDICTED: uncharacterized protein LOC105118489 isoform X1 [Populus euphratica]
6 Hb_000053_060 0.1299055863 - - hypothetical protein VITISV_022618 [Vitis vinifera]
7 Hb_098315_080 0.1434655771 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
8 Hb_007973_010 0.1455004332 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
9 Hb_001999_210 0.1459047795 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Eucalyptus grandis]
10 Hb_000789_200 0.1479116404 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
11 Hb_004480_100 0.150536961 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
12 Hb_000286_200 0.1518093056 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
13 Hb_000197_220 0.1545635144 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
14 Hb_000227_070 0.1548912441 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
15 Hb_002768_060 0.1549471242 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
16 Hb_000392_160 0.1550516268 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
17 Hb_179924_010 0.1560774178 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
18 Hb_000613_070 0.1592158026 - - -
19 Hb_011485_060 0.1597927288 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
20 Hb_002213_020 0.1600731815 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_052764_110 Hb_052764_110 Hb_001452_210 Hb_001452_210 Hb_052764_110--Hb_001452_210 Hb_007023_030 Hb_007023_030 Hb_052764_110--Hb_007023_030 Hb_004785_080 Hb_004785_080 Hb_052764_110--Hb_004785_080 Hb_002338_050 Hb_002338_050 Hb_052764_110--Hb_002338_050 Hb_000053_060 Hb_000053_060 Hb_052764_110--Hb_000053_060 Hb_098315_080 Hb_098315_080 Hb_052764_110--Hb_098315_080 Hb_001452_210--Hb_098315_080 Hb_000227_070 Hb_000227_070 Hb_001452_210--Hb_000227_070 Hb_179924_010 Hb_179924_010 Hb_001452_210--Hb_179924_010 Hb_003098_080 Hb_003098_080 Hb_001452_210--Hb_003098_080 Hb_001221_340 Hb_001221_340 Hb_001452_210--Hb_001221_340 Hb_002768_060 Hb_002768_060 Hb_007023_030--Hb_002768_060 Hb_004480_100 Hb_004480_100 Hb_007023_030--Hb_004480_100 Hb_000789_200 Hb_000789_200 Hb_007023_030--Hb_000789_200 Hb_000656_010 Hb_000656_010 Hb_007023_030--Hb_000656_010 Hb_003467_030 Hb_003467_030 Hb_007023_030--Hb_003467_030 Hb_001876_010 Hb_001876_010 Hb_007023_030--Hb_001876_010 Hb_000204_070 Hb_000204_070 Hb_004785_080--Hb_000204_070 Hb_000197_220 Hb_000197_220 Hb_004785_080--Hb_000197_220 Hb_158560_010 Hb_158560_010 Hb_004785_080--Hb_158560_010 Hb_001999_210 Hb_001999_210 Hb_004785_080--Hb_001999_210 Hb_004785_080--Hb_000789_200 Hb_002338_050--Hb_004480_100 Hb_002338_050--Hb_007023_030 Hb_002338_050--Hb_003467_030 Hb_001242_130 Hb_001242_130 Hb_002338_050--Hb_001242_130 Hb_002338_050--Hb_002768_060 Hb_002338_050--Hb_000789_200 Hb_000053_060--Hb_098315_080 Hb_000053_060--Hb_007023_030 Hb_002908_060 Hb_002908_060 Hb_000053_060--Hb_002908_060 Hb_000183_030 Hb_000183_030 Hb_000053_060--Hb_000183_030 Hb_004411_060 Hb_004411_060 Hb_000053_060--Hb_004411_060 Hb_098315_080--Hb_007023_030 Hb_098315_080--Hb_004411_060 Hb_004449_080 Hb_004449_080 Hb_098315_080--Hb_004449_080 Hb_006909_010 Hb_006909_010 Hb_098315_080--Hb_006909_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.5285 13.5155 3.3365 18.141 8.83322 15.7927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.3524 13.3352 9.74582 38.601 41.7886

CAGE analysis