Hb_098315_080

Information

Type -
Description -
Location Contig98315: 28665-41273
Sequence    

Annotation

kegg
ID rcu:RCOM_0818850
description methylmalonate-semialdehyde dehydrogenase, putative (EC:1.2.1.27)
nr
ID XP_002518343.1
description methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
swissprot
ID Q0WM29
description Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana GN=ALDH6B2 PE=2 SV=2
trembl
ID B9RX74
description Methylmalonate-semialdehyde dehydrogenase, putative OS=Ricinus communis GN=RCOM_0818850 PE=3 SV=1
Gene Ontology
ID GO:0004491
description methylmalonate-semialdehyde dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64500: 28712-41239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098315_080 0.0 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
2 Hb_007023_030 0.095136031 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
3 Hb_000053_060 0.097334685 - - hypothetical protein VITISV_022618 [Vitis vinifera]
4 Hb_004411_060 0.1046165179 - - acetolactate synthase, putative [Ricinus communis]
5 Hb_004449_080 0.105699305 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
6 Hb_006909_010 0.1061143101 - - 5-oxoprolinase, putative [Ricinus communis]
7 Hb_001452_210 0.1136601959 - - molybdopterin biosynthesis CNX1 protein [Arabidopsis thaliana]
8 Hb_003370_050 0.1148936027 - - PREDICTED: uncharacterized protein LOC103697550 [Phoenix dactylifera]
9 Hb_002908_050 0.1161150641 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
10 Hb_001157_110 0.1187374597 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
11 Hb_164898_010 0.1216021606 - - Cysteine-rich protein, putative [Theobroma cacao]
12 Hb_000028_390 0.1231862712 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
13 Hb_001246_030 0.1253370507 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
14 Hb_000497_110 0.1262163782 - - PREDICTED: uncharacterized protein LOC105647268 [Jatropha curcas]
15 Hb_004800_200 0.1270390765 - - -
16 Hb_007558_100 0.1277056108 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
17 Hb_019053_030 0.1281852383 - - PREDICTED: sulfite oxidase [Jatropha curcas]
18 Hb_000872_010 0.1301749044 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
19 Hb_008447_040 0.1318300129 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
20 Hb_002400_410 0.1324885565 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_098315_080 Hb_098315_080 Hb_007023_030 Hb_007023_030 Hb_098315_080--Hb_007023_030 Hb_000053_060 Hb_000053_060 Hb_098315_080--Hb_000053_060 Hb_004411_060 Hb_004411_060 Hb_098315_080--Hb_004411_060 Hb_004449_080 Hb_004449_080 Hb_098315_080--Hb_004449_080 Hb_006909_010 Hb_006909_010 Hb_098315_080--Hb_006909_010 Hb_001452_210 Hb_001452_210 Hb_098315_080--Hb_001452_210 Hb_002768_060 Hb_002768_060 Hb_007023_030--Hb_002768_060 Hb_004480_100 Hb_004480_100 Hb_007023_030--Hb_004480_100 Hb_000789_200 Hb_000789_200 Hb_007023_030--Hb_000789_200 Hb_000656_010 Hb_000656_010 Hb_007023_030--Hb_000656_010 Hb_003467_030 Hb_003467_030 Hb_007023_030--Hb_003467_030 Hb_001876_010 Hb_001876_010 Hb_007023_030--Hb_001876_010 Hb_000053_060--Hb_007023_030 Hb_002908_060 Hb_002908_060 Hb_000053_060--Hb_002908_060 Hb_000183_030 Hb_000183_030 Hb_000053_060--Hb_000183_030 Hb_000053_060--Hb_004411_060 Hb_052764_110 Hb_052764_110 Hb_000053_060--Hb_052764_110 Hb_164898_010 Hb_164898_010 Hb_004411_060--Hb_164898_010 Hb_004411_060--Hb_006909_010 Hb_002005_100 Hb_002005_100 Hb_004411_060--Hb_002005_100 Hb_025193_040 Hb_025193_040 Hb_004411_060--Hb_025193_040 Hb_003747_020 Hb_003747_020 Hb_004411_060--Hb_003747_020 Hb_000028_390 Hb_000028_390 Hb_004449_080--Hb_000028_390 Hb_003370_050 Hb_003370_050 Hb_004449_080--Hb_003370_050 Hb_004449_080--Hb_006909_010 Hb_004449_080--Hb_164898_010 Hb_003294_090 Hb_003294_090 Hb_004449_080--Hb_003294_090 Hb_019337_020 Hb_019337_020 Hb_004449_080--Hb_019337_020 Hb_006909_010--Hb_164898_010 Hb_000106_120 Hb_000106_120 Hb_006909_010--Hb_000106_120 Hb_003498_130 Hb_003498_130 Hb_006909_010--Hb_003498_130 Hb_006909_010--Hb_000028_390 Hb_006909_010--Hb_003294_090 Hb_001452_210--Hb_052764_110 Hb_000227_070 Hb_000227_070 Hb_001452_210--Hb_000227_070 Hb_179924_010 Hb_179924_010 Hb_001452_210--Hb_179924_010 Hb_003098_080 Hb_003098_080 Hb_001452_210--Hb_003098_080 Hb_001221_340 Hb_001221_340 Hb_001452_210--Hb_001221_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.44843 6.55928 2.5166 11.8364 5.9525 13.9169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.65718 6.90571 11.6372 25.2867 14.9253

CAGE analysis