Hb_164898_010

Information

Type -
Description -
Location Contig164898: 164-988
Sequence    

Annotation

kegg
ID tcc:TCM_030110
description Cysteine-rich protein, putative
nr
ID XP_007025946.1
description Cysteine-rich protein, putative [Theobroma cacao]
swissprot
ID Q9M0X5
description Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=3 SV=1
trembl
ID A0A061GGK9
description Cysteine-rich protein, putative OS=Theobroma cacao GN=TCM_030110 PE=3 SV=1
Gene Ontology
ID GO:0000166
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164898_010 0.0 - - Cysteine-rich protein, putative [Theobroma cacao]
2 Hb_006909_010 0.0704164119 - - 5-oxoprolinase, putative [Ricinus communis]
3 Hb_004449_080 0.07504217 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
4 Hb_003294_090 0.0918366299 - - conserved hypothetical protein [Ricinus communis]
5 Hb_019337_020 0.095287526 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
6 Hb_001227_080 0.1027929327 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000106_120 0.1044144895 - - hypothetical protein glysoja_007050 [Glycine soja]
8 Hb_000028_390 0.1083448917 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
9 Hb_003370_050 0.108668071 - - PREDICTED: uncharacterized protein LOC103697550 [Phoenix dactylifera]
10 Hb_004411_060 0.108838234 - - acetolactate synthase, putative [Ricinus communis]
11 Hb_002063_020 0.1090834556 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
12 Hb_004032_380 0.1090985838 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
13 Hb_009296_040 0.1096402447 - - hypothetical protein L484_007435 [Morus notabilis]
14 Hb_010174_110 0.1103921858 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
15 Hb_085781_020 0.1103993721 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
16 Hb_071130_010 0.1119127427 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
17 Hb_172632_110 0.1122461944 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
18 Hb_025193_040 0.1129329268 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
19 Hb_017358_040 0.1139919386 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
20 Hb_002099_080 0.1143071379 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]

Gene co-expression network

sample Hb_164898_010 Hb_164898_010 Hb_006909_010 Hb_006909_010 Hb_164898_010--Hb_006909_010 Hb_004449_080 Hb_004449_080 Hb_164898_010--Hb_004449_080 Hb_003294_090 Hb_003294_090 Hb_164898_010--Hb_003294_090 Hb_019337_020 Hb_019337_020 Hb_164898_010--Hb_019337_020 Hb_001227_080 Hb_001227_080 Hb_164898_010--Hb_001227_080 Hb_000106_120 Hb_000106_120 Hb_164898_010--Hb_000106_120 Hb_006909_010--Hb_004449_080 Hb_006909_010--Hb_000106_120 Hb_003498_130 Hb_003498_130 Hb_006909_010--Hb_003498_130 Hb_000028_390 Hb_000028_390 Hb_006909_010--Hb_000028_390 Hb_006909_010--Hb_003294_090 Hb_004449_080--Hb_000028_390 Hb_003370_050 Hb_003370_050 Hb_004449_080--Hb_003370_050 Hb_004449_080--Hb_003294_090 Hb_004449_080--Hb_019337_020 Hb_003253_040 Hb_003253_040 Hb_003294_090--Hb_003253_040 Hb_005901_020 Hb_005901_020 Hb_003294_090--Hb_005901_020 Hb_002740_110 Hb_002740_110 Hb_003294_090--Hb_002740_110 Hb_010174_110 Hb_010174_110 Hb_003294_090--Hb_010174_110 Hb_015175_020 Hb_015175_020 Hb_003294_090--Hb_015175_020 Hb_002063_020 Hb_002063_020 Hb_003294_090--Hb_002063_020 Hb_019337_020--Hb_001227_080 Hb_000358_050 Hb_000358_050 Hb_019337_020--Hb_000358_050 Hb_007818_010 Hb_007818_010 Hb_019337_020--Hb_007818_010 Hb_009296_040 Hb_009296_040 Hb_019337_020--Hb_009296_040 Hb_002639_080 Hb_002639_080 Hb_019337_020--Hb_002639_080 Hb_000388_090 Hb_000388_090 Hb_019337_020--Hb_000388_090 Hb_001227_080--Hb_007818_010 Hb_000672_040 Hb_000672_040 Hb_001227_080--Hb_000672_040 Hb_001227_080--Hb_002639_080 Hb_001417_030 Hb_001417_030 Hb_001227_080--Hb_001417_030 Hb_001227_080--Hb_000388_090 Hb_002477_090 Hb_002477_090 Hb_000106_120--Hb_002477_090 Hb_000340_490 Hb_000340_490 Hb_000106_120--Hb_000340_490 Hb_000106_120--Hb_002639_080 Hb_000684_290 Hb_000684_290 Hb_000106_120--Hb_000684_290 Hb_000069_120 Hb_000069_120 Hb_000106_120--Hb_000069_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.228 10.7419 2.98036 9.42801 10.3328 12.5809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.50795 7.94878 15.9895 23.5077 15.799

CAGE analysis