Hb_015175_020

Information

Type -
Description -
Location Contig15175: 9242-28790
Sequence    

Annotation

kegg
ID cmo:103491965
description UPF0202 protein At1g10490-like
nr
ID KDP28681.1
description hypothetical protein JCGZ_14452 [Jatropha curcas]
swissprot
ID Q9XIK4
description UPF0202 protein At1g10490 OS=Arabidopsis thaliana GN=At1g10490 PE=2 SV=2
trembl
ID A0A067JXI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14452 PE=4 SV=1
Gene Ontology
ID GO:0008080
description upf0202 protein at1g10490-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12885: 10994-12567 , PASA_asmbl_12886: 17072-17491 , PASA_asmbl_12887: 17118-18853 , PASA_asmbl_12888: 20281-23881 , PASA_asmbl_12889: 24058-28722 , PASA_asmbl_12891: 25812-28657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015175_020 0.0 - - hypothetical protein JCGZ_14452 [Jatropha curcas]
2 Hb_003294_090 0.0845762482 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000999_050 0.0865331275 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
4 Hb_000028_480 0.0894986737 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
5 Hb_004724_150 0.0910744186 - - expressed protein, putative [Ricinus communis]
6 Hb_004607_050 0.0917109656 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
7 Hb_000832_020 0.0940298686 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
8 Hb_002740_180 0.0949992858 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001619_070 0.0956759231 - - PREDICTED: uncharacterized protein LOC103503585 [Cucumis melo]
10 Hb_001341_170 0.0961986736 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
11 Hb_000185_040 0.0969680281 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
12 Hb_007044_140 0.0972604174 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
13 Hb_001009_170 0.0977906395 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
14 Hb_000976_300 0.0988479291 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
15 Hb_004994_220 0.1008594886 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
16 Hb_002942_100 0.1008787706 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
17 Hb_003688_150 0.1017964494 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
18 Hb_000707_050 0.1034961586 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
19 Hb_002311_040 0.1041593353 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
20 Hb_001357_020 0.1046180332 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_015175_020 Hb_015175_020 Hb_003294_090 Hb_003294_090 Hb_015175_020--Hb_003294_090 Hb_000999_050 Hb_000999_050 Hb_015175_020--Hb_000999_050 Hb_000028_480 Hb_000028_480 Hb_015175_020--Hb_000028_480 Hb_004724_150 Hb_004724_150 Hb_015175_020--Hb_004724_150 Hb_004607_050 Hb_004607_050 Hb_015175_020--Hb_004607_050 Hb_000832_020 Hb_000832_020 Hb_015175_020--Hb_000832_020 Hb_003253_040 Hb_003253_040 Hb_003294_090--Hb_003253_040 Hb_005901_020 Hb_005901_020 Hb_003294_090--Hb_005901_020 Hb_002740_110 Hb_002740_110 Hb_003294_090--Hb_002740_110 Hb_010174_110 Hb_010174_110 Hb_003294_090--Hb_010174_110 Hb_002063_020 Hb_002063_020 Hb_003294_090--Hb_002063_020 Hb_000999_050--Hb_004607_050 Hb_004994_220 Hb_004994_220 Hb_000999_050--Hb_004994_220 Hb_004837_130 Hb_004837_130 Hb_000999_050--Hb_004837_130 Hb_002740_180 Hb_002740_180 Hb_000999_050--Hb_002740_180 Hb_006938_080 Hb_006938_080 Hb_000999_050--Hb_006938_080 Hb_001009_170 Hb_001009_170 Hb_000999_050--Hb_001009_170 Hb_002518_260 Hb_002518_260 Hb_000028_480--Hb_002518_260 Hb_007479_040 Hb_007479_040 Hb_000028_480--Hb_007479_040 Hb_000792_010 Hb_000792_010 Hb_000028_480--Hb_000792_010 Hb_001198_100 Hb_001198_100 Hb_000028_480--Hb_001198_100 Hb_000976_300 Hb_000976_300 Hb_000028_480--Hb_000976_300 Hb_028912_050 Hb_028912_050 Hb_000028_480--Hb_028912_050 Hb_000297_010 Hb_000297_010 Hb_004724_150--Hb_000297_010 Hb_001341_170 Hb_001341_170 Hb_004724_150--Hb_001341_170 Hb_000245_040 Hb_000245_040 Hb_004724_150--Hb_000245_040 Hb_000028_180 Hb_000028_180 Hb_004724_150--Hb_000028_180 Hb_000556_160 Hb_000556_160 Hb_004724_150--Hb_000556_160 Hb_000107_490 Hb_000107_490 Hb_004724_150--Hb_000107_490 Hb_000866_170 Hb_000866_170 Hb_004607_050--Hb_000866_170 Hb_005490_030 Hb_005490_030 Hb_004607_050--Hb_005490_030 Hb_002942_100 Hb_002942_100 Hb_004607_050--Hb_002942_100 Hb_000185_040 Hb_000185_040 Hb_004607_050--Hb_000185_040 Hb_004607_050--Hb_006938_080 Hb_002217_300 Hb_002217_300 Hb_000832_020--Hb_002217_300 Hb_000032_100 Hb_000032_100 Hb_000832_020--Hb_000032_100 Hb_000707_050 Hb_000707_050 Hb_000832_020--Hb_000707_050 Hb_000739_310 Hb_000739_310 Hb_000832_020--Hb_000739_310 Hb_002311_040 Hb_002311_040 Hb_000832_020--Hb_002311_040 Hb_000796_220 Hb_000796_220 Hb_000832_020--Hb_000796_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86775 2.68983 2.06388 2.32198 3.71845 5.7823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.8023 3.58413 7.25389 6.20937 4.2066

CAGE analysis