Hb_004837_130

Information

Type -
Description -
Location Contig4837: 139025-145261
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05800g
description POPTRDRAFT_722931; armadillo/beta-catenin repeat family protein
nr
ID XP_012090005.1
description PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
swissprot
ID Q2KI54
description Armadillo repeat-containing protein 8 OS=Bos taurus GN=ARMC8 PE=2 SV=1
trembl
ID A0A067JRE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25925 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44874: 139310-144668 , PASA_asmbl_44875: 141953-143291 , PASA_asmbl_44876: 144725-144921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_130 0.0 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
2 Hb_000999_050 0.0784103269 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
3 Hb_000252_200 0.0864787048 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004607_050 0.0891546344 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
5 Hb_002675_070 0.0918191616 - - PREDICTED: protein CASC3 [Jatropha curcas]
6 Hb_000174_180 0.09300056 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_011485_070 0.0936913344 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
8 Hb_004994_220 0.0938978533 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
9 Hb_011671_180 0.0942097564 - - PREDICTED: probable quinone oxidoreductase [Jatropha curcas]
10 Hb_000015_040 0.0948641367 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
11 Hb_000977_110 0.0949051339 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Jatropha curcas]
12 Hb_000890_210 0.0965397209 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
13 Hb_005490_030 0.0976050144 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
14 Hb_001377_510 0.0993281846 - - ormdl, putative [Ricinus communis]
15 Hb_002213_070 0.0994315988 - - epsilon-adaptin family protein [Populus trichocarpa]
16 Hb_001635_060 0.1000110359 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
17 Hb_002000_080 0.100153248 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
18 Hb_000497_110 0.1004857014 - - PREDICTED: uncharacterized protein LOC105647268 [Jatropha curcas]
19 Hb_001009_170 0.100570159 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_002740_180 0.1015029222 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004837_130 Hb_004837_130 Hb_000999_050 Hb_000999_050 Hb_004837_130--Hb_000999_050 Hb_000252_200 Hb_000252_200 Hb_004837_130--Hb_000252_200 Hb_004607_050 Hb_004607_050 Hb_004837_130--Hb_004607_050 Hb_002675_070 Hb_002675_070 Hb_004837_130--Hb_002675_070 Hb_000174_180 Hb_000174_180 Hb_004837_130--Hb_000174_180 Hb_011485_070 Hb_011485_070 Hb_004837_130--Hb_011485_070 Hb_000999_050--Hb_004607_050 Hb_004994_220 Hb_004994_220 Hb_000999_050--Hb_004994_220 Hb_002740_180 Hb_002740_180 Hb_000999_050--Hb_002740_180 Hb_006938_080 Hb_006938_080 Hb_000999_050--Hb_006938_080 Hb_001009_170 Hb_001009_170 Hb_000999_050--Hb_001009_170 Hb_000260_270 Hb_000260_270 Hb_000252_200--Hb_000260_270 Hb_011671_180 Hb_011671_180 Hb_000252_200--Hb_011671_180 Hb_000023_280 Hb_000023_280 Hb_000252_200--Hb_000023_280 Hb_000866_170 Hb_000866_170 Hb_000252_200--Hb_000866_170 Hb_000252_200--Hb_004994_220 Hb_004607_050--Hb_000866_170 Hb_005490_030 Hb_005490_030 Hb_004607_050--Hb_005490_030 Hb_002942_100 Hb_002942_100 Hb_004607_050--Hb_002942_100 Hb_000185_040 Hb_000185_040 Hb_004607_050--Hb_000185_040 Hb_004607_050--Hb_006938_080 Hb_004032_150 Hb_004032_150 Hb_002675_070--Hb_004032_150 Hb_002675_070--Hb_011485_070 Hb_000127_040 Hb_000127_040 Hb_002675_070--Hb_000127_040 Hb_002213_070 Hb_002213_070 Hb_002675_070--Hb_002213_070 Hb_002675_070--Hb_000185_040 Hb_001198_100 Hb_001198_100 Hb_002675_070--Hb_001198_100 Hb_000028_390 Hb_000028_390 Hb_000174_180--Hb_000028_390 Hb_000665_060 Hb_000665_060 Hb_000174_180--Hb_000665_060 Hb_001449_040 Hb_001449_040 Hb_000174_180--Hb_001449_040 Hb_000590_050 Hb_000590_050 Hb_000174_180--Hb_000590_050 Hb_000192_080 Hb_000192_080 Hb_000174_180--Hb_000192_080 Hb_019616_020 Hb_019616_020 Hb_000174_180--Hb_019616_020 Hb_011485_070--Hb_000185_040 Hb_001341_170 Hb_001341_170 Hb_011485_070--Hb_001341_170 Hb_011485_070--Hb_004032_150 Hb_000092_170 Hb_000092_170 Hb_011485_070--Hb_000092_170 Hb_002481_080 Hb_002481_080 Hb_011485_070--Hb_002481_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.3571 6.62134 2.3838 8.84979 6.12406 10.3747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5272 6.15906 11.1485 10.7348 7.14236

CAGE analysis