Hb_019616_020

Information

Type -
Description -
Location Contig19616: 48118-63718
Sequence    

Annotation

kegg
ID rcu:RCOM_0036070
description alanyl-tRNA synthetase, putative (EC:6.1.1.7)
nr
ID XP_012065800.1
description PREDICTED: alanine--tRNA ligase [Jatropha curcas]
swissprot
ID P36428
description Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3
trembl
ID A0A067LGK7
description Alanine--tRNA ligase OS=Jatropha curcas GN=JCGZ_24210 PE=3 SV=1
Gene Ontology
ID GO:0005739
description alanine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19677: 48233-63604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019616_020 0.0 - - PREDICTED: alanine--tRNA ligase [Jatropha curcas]
2 Hb_000011_060 0.0672320132 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
3 Hb_001876_010 0.069542885 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
4 Hb_000053_040 0.0728105069 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
5 Hb_011674_020 0.0808643732 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
6 Hb_002600_150 0.081359576 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
7 Hb_000028_390 0.0821513576 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
8 Hb_000174_180 0.0847002998 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_005357_160 0.0847812208 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
10 Hb_013726_090 0.0875812272 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
11 Hb_002908_050 0.0891669093 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
12 Hb_000110_190 0.0926102406 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
13 Hb_000138_100 0.0943078215 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
14 Hb_000352_310 0.0944230113 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
15 Hb_000872_010 0.0944621666 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
16 Hb_000521_250 0.0954818582 - - PREDICTED: protein N-terminal asparagine amidohydrolase isoform X2 [Jatropha curcas]
17 Hb_002110_190 0.0969551768 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
18 Hb_000189_550 0.0971513304 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
19 Hb_001571_050 0.0978278078 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
20 Hb_002768_060 0.0978572297 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_019616_020 Hb_019616_020 Hb_000011_060 Hb_000011_060 Hb_019616_020--Hb_000011_060 Hb_001876_010 Hb_001876_010 Hb_019616_020--Hb_001876_010 Hb_000053_040 Hb_000053_040 Hb_019616_020--Hb_000053_040 Hb_011674_020 Hb_011674_020 Hb_019616_020--Hb_011674_020 Hb_002600_150 Hb_002600_150 Hb_019616_020--Hb_002600_150 Hb_000028_390 Hb_000028_390 Hb_019616_020--Hb_000028_390 Hb_000011_060--Hb_001876_010 Hb_013726_090 Hb_013726_090 Hb_000011_060--Hb_013726_090 Hb_000614_240 Hb_000614_240 Hb_000011_060--Hb_000614_240 Hb_000984_170 Hb_000984_170 Hb_000011_060--Hb_000984_170 Hb_010142_020 Hb_010142_020 Hb_000011_060--Hb_010142_020 Hb_001105_020 Hb_001105_020 Hb_000011_060--Hb_001105_020 Hb_002908_050 Hb_002908_050 Hb_001876_010--Hb_002908_050 Hb_000189_550 Hb_000189_550 Hb_001876_010--Hb_000189_550 Hb_000069_210 Hb_000069_210 Hb_001876_010--Hb_000069_210 Hb_001876_010--Hb_000028_390 Hb_001876_010--Hb_000984_170 Hb_000053_040--Hb_002600_150 Hb_000138_100 Hb_000138_100 Hb_000053_040--Hb_000138_100 Hb_056691_060 Hb_056691_060 Hb_000053_040--Hb_056691_060 Hb_001417_030 Hb_001417_030 Hb_000053_040--Hb_001417_030 Hb_000053_040--Hb_000011_060 Hb_003734_010 Hb_003734_010 Hb_000053_040--Hb_003734_010 Hb_011674_020--Hb_013726_090 Hb_001571_050 Hb_001571_050 Hb_011674_020--Hb_001571_050 Hb_007380_060 Hb_007380_060 Hb_011674_020--Hb_007380_060 Hb_000111_320 Hb_000111_320 Hb_011674_020--Hb_000111_320 Hb_001876_050 Hb_001876_050 Hb_011674_020--Hb_001876_050 Hb_001999_310 Hb_001999_310 Hb_011674_020--Hb_001999_310 Hb_012733_030 Hb_012733_030 Hb_002600_150--Hb_012733_030 Hb_001357_020 Hb_001357_020 Hb_002600_150--Hb_001357_020 Hb_002600_150--Hb_000138_100 Hb_002600_150--Hb_013726_090 Hb_001473_180 Hb_001473_180 Hb_002600_150--Hb_001473_180 Hb_009296_040 Hb_009296_040 Hb_000028_390--Hb_009296_040 Hb_000174_180 Hb_000174_180 Hb_000028_390--Hb_000174_180 Hb_004449_080 Hb_004449_080 Hb_000028_390--Hb_004449_080 Hb_000140_210 Hb_000140_210 Hb_000028_390--Hb_000140_210 Hb_000028_390--Hb_000011_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1652 23.3707 17.5108 35.3034 25.9223 31.9501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.9801 16.6303 33.9254 45.7828 42.3166

CAGE analysis