Hb_004449_080

Information

Type transcription factor
Description TF Family: SET
Location Contig4449: 56415-58436
Sequence    

Annotation

kegg
ID rcu:RCOM_0622490
description histone-lysine n-methyltransferase, suvh, putative (EC:2.1.1.43)
nr
ID XP_012068760.1
description PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
swissprot
ID Q9C5P4
description Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Arabidopsis thaliana GN=SUVH3 PE=2 SV=2
trembl
ID A0A067KWR5
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_24601 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n- h3 lysine-9 specific suvh3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42817: 54372-58917
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_080 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
2 Hb_000028_390 0.0670071368 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
3 Hb_003370_050 0.0700194785 - - PREDICTED: uncharacterized protein LOC103697550 [Phoenix dactylifera]
4 Hb_006909_010 0.0731323787 - - 5-oxoprolinase, putative [Ricinus communis]
5 Hb_164898_010 0.07504217 - - Cysteine-rich protein, putative [Theobroma cacao]
6 Hb_003294_090 0.0876759239 - - conserved hypothetical protein [Ricinus communis]
7 Hb_019337_020 0.0927096226 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
8 Hb_172632_110 0.0927114685 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
9 Hb_001227_080 0.0927612735 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_010174_110 0.096113602 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
11 Hb_000388_090 0.0962149024 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
12 Hb_004032_380 0.0975085511 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
13 Hb_004020_020 0.100532015 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820 [Jatropha curcas]
14 Hb_000025_790 0.1012612293 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
15 Hb_000174_180 0.1013340041 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000352_340 0.102214257 - - PREDICTED: importin-13 [Jatropha curcas]
17 Hb_000106_120 0.1023219546 - - hypothetical protein glysoja_007050 [Glycine soja]
18 Hb_002908_050 0.1033910346 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
19 Hb_085781_020 0.105280922 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
20 Hb_009296_040 0.1055221621 - - hypothetical protein L484_007435 [Morus notabilis]

Gene co-expression network

sample Hb_004449_080 Hb_004449_080 Hb_000028_390 Hb_000028_390 Hb_004449_080--Hb_000028_390 Hb_003370_050 Hb_003370_050 Hb_004449_080--Hb_003370_050 Hb_006909_010 Hb_006909_010 Hb_004449_080--Hb_006909_010 Hb_164898_010 Hb_164898_010 Hb_004449_080--Hb_164898_010 Hb_003294_090 Hb_003294_090 Hb_004449_080--Hb_003294_090 Hb_019337_020 Hb_019337_020 Hb_004449_080--Hb_019337_020 Hb_009296_040 Hb_009296_040 Hb_000028_390--Hb_009296_040 Hb_001876_010 Hb_001876_010 Hb_000028_390--Hb_001876_010 Hb_000174_180 Hb_000174_180 Hb_000028_390--Hb_000174_180 Hb_000140_210 Hb_000140_210 Hb_000028_390--Hb_000140_210 Hb_000011_060 Hb_000011_060 Hb_000028_390--Hb_000011_060 Hb_004020_020 Hb_004020_020 Hb_003370_050--Hb_004020_020 Hb_003370_050--Hb_000028_390 Hb_000999_050 Hb_000999_050 Hb_003370_050--Hb_000999_050 Hb_004607_050 Hb_004607_050 Hb_003370_050--Hb_004607_050 Hb_003370_050--Hb_003294_090 Hb_006909_010--Hb_164898_010 Hb_000106_120 Hb_000106_120 Hb_006909_010--Hb_000106_120 Hb_003498_130 Hb_003498_130 Hb_006909_010--Hb_003498_130 Hb_006909_010--Hb_000028_390 Hb_006909_010--Hb_003294_090 Hb_164898_010--Hb_003294_090 Hb_164898_010--Hb_019337_020 Hb_001227_080 Hb_001227_080 Hb_164898_010--Hb_001227_080 Hb_164898_010--Hb_000106_120 Hb_003253_040 Hb_003253_040 Hb_003294_090--Hb_003253_040 Hb_005901_020 Hb_005901_020 Hb_003294_090--Hb_005901_020 Hb_002740_110 Hb_002740_110 Hb_003294_090--Hb_002740_110 Hb_010174_110 Hb_010174_110 Hb_003294_090--Hb_010174_110 Hb_015175_020 Hb_015175_020 Hb_003294_090--Hb_015175_020 Hb_002063_020 Hb_002063_020 Hb_003294_090--Hb_002063_020 Hb_019337_020--Hb_001227_080 Hb_000358_050 Hb_000358_050 Hb_019337_020--Hb_000358_050 Hb_007818_010 Hb_007818_010 Hb_019337_020--Hb_007818_010 Hb_019337_020--Hb_009296_040 Hb_002639_080 Hb_002639_080 Hb_019337_020--Hb_002639_080 Hb_000388_090 Hb_000388_090 Hb_019337_020--Hb_000388_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.7278 38.6085 10.2412 29.4958 23.518 42.8673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.7878 24.017 51.0146 64.6728 48.1767

CAGE analysis