Hb_006909_010

Information

Type -
Description -
Location Contig6909: 18362-22168
Sequence    

Annotation

kegg
ID rcu:RCOM_1248770
description 5-oxoprolinase, putative (EC:3.5.2.9)
nr
ID XP_002527743.1
description 5-oxoprolinase, putative [Ricinus communis]
swissprot
ID Q9FIZ7
description 5-oxoprolinase OS=Arabidopsis thaliana GN=OXP1 PE=2 SV=1
trembl
ID B9SP24
description 5-oxoprolinase, putative OS=Ricinus communis GN=RCOM_1248770 PE=4 SV=1
Gene Ontology
ID GO:0005829
description 5-oxoprolinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54331: 21900-22603
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006909_010 0.0 - - 5-oxoprolinase, putative [Ricinus communis]
2 Hb_164898_010 0.0704164119 - - Cysteine-rich protein, putative [Theobroma cacao]
3 Hb_004449_080 0.0731323787 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
4 Hb_000106_120 0.0863002399 - - hypothetical protein glysoja_007050 [Glycine soja]
5 Hb_003498_130 0.0910907972 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
6 Hb_000028_390 0.0925771875 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
7 Hb_003294_090 0.0939878613 - - conserved hypothetical protein [Ricinus communis]
8 Hb_019337_020 0.0948097281 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
9 Hb_017358_040 0.0951753232 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
10 Hb_002639_080 0.0955610438 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
11 Hb_001227_080 0.1006247368 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002667_050 0.103599981 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
13 Hb_025193_040 0.1039468773 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
14 Hb_085781_020 0.104037143 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
15 Hb_004143_160 0.1041910109 - - SAB, putative [Ricinus communis]
16 Hb_098315_080 0.1061143101 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
17 Hb_000069_120 0.1071504097 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
18 Hb_000340_490 0.1079314697 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
19 Hb_001449_040 0.1080170733 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
20 Hb_000062_450 0.1088894623 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]

Gene co-expression network

sample Hb_006909_010 Hb_006909_010 Hb_164898_010 Hb_164898_010 Hb_006909_010--Hb_164898_010 Hb_004449_080 Hb_004449_080 Hb_006909_010--Hb_004449_080 Hb_000106_120 Hb_000106_120 Hb_006909_010--Hb_000106_120 Hb_003498_130 Hb_003498_130 Hb_006909_010--Hb_003498_130 Hb_000028_390 Hb_000028_390 Hb_006909_010--Hb_000028_390 Hb_003294_090 Hb_003294_090 Hb_006909_010--Hb_003294_090 Hb_164898_010--Hb_004449_080 Hb_164898_010--Hb_003294_090 Hb_019337_020 Hb_019337_020 Hb_164898_010--Hb_019337_020 Hb_001227_080 Hb_001227_080 Hb_164898_010--Hb_001227_080 Hb_164898_010--Hb_000106_120 Hb_004449_080--Hb_000028_390 Hb_003370_050 Hb_003370_050 Hb_004449_080--Hb_003370_050 Hb_004449_080--Hb_003294_090 Hb_004449_080--Hb_019337_020 Hb_002477_090 Hb_002477_090 Hb_000106_120--Hb_002477_090 Hb_000340_490 Hb_000340_490 Hb_000106_120--Hb_000340_490 Hb_002639_080 Hb_002639_080 Hb_000106_120--Hb_002639_080 Hb_000684_290 Hb_000684_290 Hb_000106_120--Hb_000684_290 Hb_000069_120 Hb_000069_120 Hb_000106_120--Hb_000069_120 Hb_002005_080 Hb_002005_080 Hb_003498_130--Hb_002005_080 Hb_003498_130--Hb_000106_120 Hb_003498_130--Hb_000684_290 Hb_011928_020 Hb_011928_020 Hb_003498_130--Hb_011928_020 Hb_000950_060 Hb_000950_060 Hb_003498_130--Hb_000950_060 Hb_009296_040 Hb_009296_040 Hb_000028_390--Hb_009296_040 Hb_001876_010 Hb_001876_010 Hb_000028_390--Hb_001876_010 Hb_000174_180 Hb_000174_180 Hb_000028_390--Hb_000174_180 Hb_000140_210 Hb_000140_210 Hb_000028_390--Hb_000140_210 Hb_000011_060 Hb_000011_060 Hb_000028_390--Hb_000011_060 Hb_003253_040 Hb_003253_040 Hb_003294_090--Hb_003253_040 Hb_005901_020 Hb_005901_020 Hb_003294_090--Hb_005901_020 Hb_002740_110 Hb_002740_110 Hb_003294_090--Hb_002740_110 Hb_010174_110 Hb_010174_110 Hb_003294_090--Hb_010174_110 Hb_015175_020 Hb_015175_020 Hb_003294_090--Hb_015175_020 Hb_002063_020 Hb_002063_020 Hb_003294_090--Hb_002063_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5039 16.169 5.19365 13.7448 13.1736 20.3361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3165 7.62837 18.5433 34.5621 25.6289

CAGE analysis