Hb_000340_490

Information

Type -
Description -
Location Contig340: 404157-405557
Sequence    

Annotation

kegg
ID rcu:RCOM_0557210
description ankyrin repeat-containing protein, putative
nr
ID XP_012092334.1
description PREDICTED: ankyrin-1-like [Jatropha curcas]
swissprot
ID Q01484
description Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4
trembl
ID A0A067JPS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22005 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_490 0.0 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
2 Hb_002639_080 0.0661587112 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
3 Hb_071130_010 0.0702198056 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
4 Hb_004934_050 0.0712499389 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
5 Hb_000069_120 0.07246564 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
6 Hb_000106_120 0.0747098877 - - hypothetical protein glysoja_007050 [Glycine soja]
7 Hb_001628_070 0.0766616575 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_004208_050 0.0795592108 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
9 Hb_002213_020 0.0810439532 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
10 Hb_002477_090 0.0817784368 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
11 Hb_007632_010 0.0821902125 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
12 Hb_041327_010 0.0824615292 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
13 Hb_006531_020 0.082601497 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
14 Hb_000083_270 0.0832133704 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
15 Hb_000230_260 0.0835271897 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
16 Hb_004705_020 0.0851811377 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
17 Hb_000453_250 0.0860147364 - - PREDICTED: uncharacterized protein LOC105637185 [Jatropha curcas]
18 Hb_001105_160 0.0862952134 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
19 Hb_000412_010 0.0877483613 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_000261_480 0.0884481528 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000340_490 Hb_000340_490 Hb_002639_080 Hb_002639_080 Hb_000340_490--Hb_002639_080 Hb_071130_010 Hb_071130_010 Hb_000340_490--Hb_071130_010 Hb_004934_050 Hb_004934_050 Hb_000340_490--Hb_004934_050 Hb_000069_120 Hb_000069_120 Hb_000340_490--Hb_000069_120 Hb_000106_120 Hb_000106_120 Hb_000340_490--Hb_000106_120 Hb_001628_070 Hb_001628_070 Hb_000340_490--Hb_001628_070 Hb_001188_020 Hb_001188_020 Hb_002639_080--Hb_001188_020 Hb_041327_010 Hb_041327_010 Hb_002639_080--Hb_041327_010 Hb_002639_080--Hb_071130_010 Hb_004143_160 Hb_004143_160 Hb_002639_080--Hb_004143_160 Hb_002639_080--Hb_000069_120 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010 Hb_000230_260 Hb_000230_260 Hb_071130_010--Hb_000230_260 Hb_085781_020 Hb_085781_020 Hb_071130_010--Hb_085781_020 Hb_071130_010--Hb_000069_120 Hb_071130_010--Hb_001188_020 Hb_071130_010--Hb_041327_010 Hb_002477_090 Hb_002477_090 Hb_004934_050--Hb_002477_090 Hb_000920_300 Hb_000920_300 Hb_004934_050--Hb_000920_300 Hb_127743_010 Hb_127743_010 Hb_004934_050--Hb_127743_010 Hb_002456_010 Hb_002456_010 Hb_004934_050--Hb_002456_010 Hb_004208_050 Hb_004208_050 Hb_004934_050--Hb_004208_050 Hb_000069_120--Hb_000230_260 Hb_000069_120--Hb_041327_010 Hb_017358_040 Hb_017358_040 Hb_000069_120--Hb_017358_040 Hb_000537_050 Hb_000537_050 Hb_000069_120--Hb_000537_050 Hb_000106_120--Hb_002477_090 Hb_006909_010 Hb_006909_010 Hb_000106_120--Hb_006909_010 Hb_000106_120--Hb_002639_080 Hb_000684_290 Hb_000684_290 Hb_000106_120--Hb_000684_290 Hb_000106_120--Hb_000069_120 Hb_004705_020 Hb_004705_020 Hb_001628_070--Hb_004705_020 Hb_006531_020 Hb_006531_020 Hb_001628_070--Hb_006531_020 Hb_004586_290 Hb_004586_290 Hb_001628_070--Hb_004586_290 Hb_000003_100 Hb_000003_100 Hb_001628_070--Hb_000003_100 Hb_000024_040 Hb_000024_040 Hb_001628_070--Hb_000024_040 Hb_000412_010 Hb_000412_010 Hb_001628_070--Hb_000412_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.15504 15.7492 4.9731 10.3392 9.3886 9.0517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.89459 7.04582 8.51872 20.4711 13.3099

CAGE analysis