Hb_002477_090

Information

Type -
Description -
Location Contig2477: 50778-58792
Sequence    

Annotation

kegg
ID rcu:RCOM_0653560
description hypothetical protein
nr
ID XP_012068901.1
description PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KX76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24716 PE=4 SV=1
Gene Ontology
ID GO:0005515
description hydroxyproline-rich glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25776: 50825-55602 , PASA_asmbl_25777: 58409-58681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_090 0.0 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
2 Hb_003913_070 0.0681162935 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
3 Hb_004934_050 0.0691817736 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
4 Hb_001761_130 0.0718572744 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
5 Hb_001123_050 0.0738657174 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000106_120 0.0739421698 - - hypothetical protein glysoja_007050 [Glycine soja]
7 Hb_003058_060 0.0748268925 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
8 Hb_000069_120 0.0761517069 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
9 Hb_000920_300 0.0793785032 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
10 Hb_001232_010 0.0814554872 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
11 Hb_000340_490 0.0817784368 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
12 Hb_006198_120 0.0827904861 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
13 Hb_001178_070 0.0836833839 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
14 Hb_002456_010 0.0836942444 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
15 Hb_000012_260 0.0842414015 - - Far upstream element-binding 2 [Gossypium arboreum]
16 Hb_017358_040 0.0852476352 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
17 Hb_009079_030 0.0854332797 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
18 Hb_017862_020 0.0864775858 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
19 Hb_003411_040 0.0865199918 - - unnamed protein product [Coffea canephora]
20 Hb_003529_170 0.0888397989 - - PREDICTED: ATP-dependent RNA helicase DHX29 [Jatropha curcas]

Gene co-expression network

sample Hb_002477_090 Hb_002477_090 Hb_003913_070 Hb_003913_070 Hb_002477_090--Hb_003913_070 Hb_004934_050 Hb_004934_050 Hb_002477_090--Hb_004934_050 Hb_001761_130 Hb_001761_130 Hb_002477_090--Hb_001761_130 Hb_001123_050 Hb_001123_050 Hb_002477_090--Hb_001123_050 Hb_000106_120 Hb_000106_120 Hb_002477_090--Hb_000106_120 Hb_003058_060 Hb_003058_060 Hb_002477_090--Hb_003058_060 Hb_003734_010 Hb_003734_010 Hb_003913_070--Hb_003734_010 Hb_000111_290 Hb_000111_290 Hb_003913_070--Hb_000111_290 Hb_001417_030 Hb_001417_030 Hb_003913_070--Hb_001417_030 Hb_001999_310 Hb_001999_310 Hb_003913_070--Hb_001999_310 Hb_001814_030 Hb_001814_030 Hb_003913_070--Hb_001814_030 Hb_003411_040 Hb_003411_040 Hb_003913_070--Hb_003411_040 Hb_000340_490 Hb_000340_490 Hb_004934_050--Hb_000340_490 Hb_000920_300 Hb_000920_300 Hb_004934_050--Hb_000920_300 Hb_127743_010 Hb_127743_010 Hb_004934_050--Hb_127743_010 Hb_002456_010 Hb_002456_010 Hb_004934_050--Hb_002456_010 Hb_004208_050 Hb_004208_050 Hb_004934_050--Hb_004208_050 Hb_172632_110 Hb_172632_110 Hb_001761_130--Hb_172632_110 Hb_006831_040 Hb_006831_040 Hb_001761_130--Hb_006831_040 Hb_017358_040 Hb_017358_040 Hb_001761_130--Hb_017358_040 Hb_001232_010 Hb_001232_010 Hb_001761_130--Hb_001232_010 Hb_010174_110 Hb_010174_110 Hb_001761_130--Hb_010174_110 Hb_000862_040 Hb_000862_040 Hb_001123_050--Hb_000862_040 Hb_000213_120 Hb_000213_120 Hb_001123_050--Hb_000213_120 Hb_023226_080 Hb_023226_080 Hb_001123_050--Hb_023226_080 Hb_005542_140 Hb_005542_140 Hb_001123_050--Hb_005542_140 Hb_001123_050--Hb_127743_010 Hb_000106_120--Hb_000340_490 Hb_006909_010 Hb_006909_010 Hb_000106_120--Hb_006909_010 Hb_002639_080 Hb_002639_080 Hb_000106_120--Hb_002639_080 Hb_000684_290 Hb_000684_290 Hb_000106_120--Hb_000684_290 Hb_000069_120 Hb_000069_120 Hb_000106_120--Hb_000069_120 Hb_000369_130 Hb_000369_130 Hb_003058_060--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_003058_060--Hb_001821_090 Hb_002107_070 Hb_002107_070 Hb_003058_060--Hb_002107_070 Hb_002170_050 Hb_002170_050 Hb_003058_060--Hb_002170_050 Hb_000579_230 Hb_000579_230 Hb_003058_060--Hb_000579_230 Hb_104061_020 Hb_104061_020 Hb_003058_060--Hb_104061_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.49814 9.44616 4.69189 5.73552 7.26201 8.47207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.42634 6.49289 5.54784 14.6183 6.81137

CAGE analysis