Hb_004208_050

Information

Type desease resistance
Description Gene Name: CDC48_N
Location Contig4208: 36836-42628
Sequence    

Annotation

kegg
ID rcu:RCOM_1355070
description Transitional endoplasmic reticulum ATPase, putative (EC:3.6.4.3)
nr
ID AHA83580.1
description cell division cycle protein 48 [Hevea brasiliensis]
swissprot
ID P54774
description Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1
trembl
ID A0A0A7A593
description Cell division cycle protein 48 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005524
description cell division cycle protein 48 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41563: 36946-42340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004208_050 0.0 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
2 Hb_000261_480 0.0390134628 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
3 Hb_004048_120 0.0571358921 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
4 Hb_000358_050 0.0580386886 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
5 Hb_011819_020 0.0586070221 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
6 Hb_002890_130 0.0634314094 - - tip120, putative [Ricinus communis]
7 Hb_002411_110 0.0641702325 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
8 Hb_003280_020 0.0644171858 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
9 Hb_004677_050 0.0645916228 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
10 Hb_001377_350 0.0668067044 - - PREDICTED: exportin-2 [Jatropha curcas]
11 Hb_002749_060 0.0680719721 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
12 Hb_007472_090 0.0711795447 - - unnamed protein product [Coffea canephora]
13 Hb_001691_200 0.0713338758 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
14 Hb_002639_080 0.0717163676 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
15 Hb_011883_020 0.0719960042 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
16 Hb_012286_040 0.0727387525 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
17 Hb_002213_020 0.0731592279 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
18 Hb_000003_100 0.0732717148 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
19 Hb_000890_070 0.0734550998 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
20 Hb_001105_020 0.0735969884 - - expressed protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004208_050 Hb_004208_050 Hb_000261_480 Hb_000261_480 Hb_004208_050--Hb_000261_480 Hb_004048_120 Hb_004048_120 Hb_004208_050--Hb_004048_120 Hb_000358_050 Hb_000358_050 Hb_004208_050--Hb_000358_050 Hb_011819_020 Hb_011819_020 Hb_004208_050--Hb_011819_020 Hb_002890_130 Hb_002890_130 Hb_004208_050--Hb_002890_130 Hb_002411_110 Hb_002411_110 Hb_004208_050--Hb_002411_110 Hb_000261_480--Hb_011819_020 Hb_000261_480--Hb_004048_120 Hb_000261_480--Hb_002890_130 Hb_003280_020 Hb_003280_020 Hb_000261_480--Hb_003280_020 Hb_001377_350 Hb_001377_350 Hb_000261_480--Hb_001377_350 Hb_004048_120--Hb_003280_020 Hb_004143_160 Hb_004143_160 Hb_004048_120--Hb_004143_160 Hb_002025_330 Hb_002025_330 Hb_004048_120--Hb_002025_330 Hb_002749_060 Hb_002749_060 Hb_004048_120--Hb_002749_060 Hb_004048_120--Hb_000358_050 Hb_000358_050--Hb_004143_160 Hb_000922_030 Hb_000922_030 Hb_000358_050--Hb_000922_030 Hb_011485_060 Hb_011485_060 Hb_000358_050--Hb_011485_060 Hb_135572_010 Hb_135572_010 Hb_000358_050--Hb_135572_010 Hb_011819_020--Hb_002890_130 Hb_000317_100 Hb_000317_100 Hb_011819_020--Hb_000317_100 Hb_011819_020--Hb_002749_060 Hb_011819_020--Hb_003280_020 Hb_005215_010 Hb_005215_010 Hb_011819_020--Hb_005215_010 Hb_002890_130--Hb_002411_110 Hb_002890_130--Hb_000317_100 Hb_002890_130--Hb_005215_010 Hb_000003_100 Hb_000003_100 Hb_002890_130--Hb_000003_100 Hb_001925_060 Hb_001925_060 Hb_002411_110--Hb_001925_060 Hb_008948_020 Hb_008948_020 Hb_002411_110--Hb_008948_020 Hb_002411_110--Hb_000317_100 Hb_002411_110--Hb_011819_020 Hb_033312_040 Hb_033312_040 Hb_002411_110--Hb_033312_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3104 41.2649 25.5345 33.9319 24.3273 27.1858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8809 20.3636 29.8 56.4243 49.6382

CAGE analysis