Hb_004143_160

Information

Type -
Description -
Location Contig4143: 193824-224727
Sequence    

Annotation

kegg
ID rcu:RCOM_0482880
description SAB, putative
nr
ID XP_002527368.1
description SAB, putative [Ricinus communis]
swissprot
ID Q6IMT1
description Protein SABRE OS=Arabidopsis thaliana GN=SAB PE=1 SV=1
trembl
ID B9SMZ9
description SAB, putative OS=Ricinus communis GN=RCOM_0482880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41069: 193922-208294 , PASA_asmbl_41071: 209629-212367 , PASA_asmbl_41074: 215802-219786 , PASA_asmbl_41075: 220709-220861 , PASA_asmbl_41076: 220886-224467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004143_160 0.0 - - SAB, putative [Ricinus communis]
2 Hb_004048_120 0.0495403691 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
3 Hb_000358_050 0.0561117567 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
4 Hb_007994_010 0.0601611014 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
5 Hb_002025_330 0.06031412 - - peptide transporter, putative [Ricinus communis]
6 Hb_135572_010 0.0607850585 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
7 Hb_002639_080 0.0642042086 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
8 Hb_012760_100 0.0696192944 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
9 Hb_003280_020 0.0700126482 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
10 Hb_000261_480 0.0735787915 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
11 Hb_000922_030 0.0746878778 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
12 Hb_001341_180 0.0752495313 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
13 Hb_001440_030 0.0764240115 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
14 Hb_004208_050 0.0769185855 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
15 Hb_000809_230 0.0770048222 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
16 Hb_025193_040 0.0783259102 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
17 Hb_002749_060 0.079095236 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
18 Hb_019337_020 0.0792388636 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
19 Hb_056691_060 0.0799327353 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
20 Hb_004679_030 0.080265123 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]

Gene co-expression network

sample Hb_004143_160 Hb_004143_160 Hb_004048_120 Hb_004048_120 Hb_004143_160--Hb_004048_120 Hb_000358_050 Hb_000358_050 Hb_004143_160--Hb_000358_050 Hb_007994_010 Hb_007994_010 Hb_004143_160--Hb_007994_010 Hb_002025_330 Hb_002025_330 Hb_004143_160--Hb_002025_330 Hb_135572_010 Hb_135572_010 Hb_004143_160--Hb_135572_010 Hb_002639_080 Hb_002639_080 Hb_004143_160--Hb_002639_080 Hb_003280_020 Hb_003280_020 Hb_004048_120--Hb_003280_020 Hb_004048_120--Hb_002025_330 Hb_002749_060 Hb_002749_060 Hb_004048_120--Hb_002749_060 Hb_000261_480 Hb_000261_480 Hb_004048_120--Hb_000261_480 Hb_004048_120--Hb_000358_050 Hb_004208_050 Hb_004208_050 Hb_000358_050--Hb_004208_050 Hb_000922_030 Hb_000922_030 Hb_000358_050--Hb_000922_030 Hb_011485_060 Hb_011485_060 Hb_000358_050--Hb_011485_060 Hb_000358_050--Hb_135572_010 Hb_007994_010--Hb_135572_010 Hb_012760_100 Hb_012760_100 Hb_007994_010--Hb_012760_100 Hb_001381_050 Hb_001381_050 Hb_007994_010--Hb_001381_050 Hb_000809_230 Hb_000809_230 Hb_007994_010--Hb_000809_230 Hb_001188_020 Hb_001188_020 Hb_007994_010--Hb_001188_020 Hb_002025_330--Hb_003280_020 Hb_002025_330--Hb_000922_030 Hb_002025_330--Hb_000358_050 Hb_055062_040 Hb_055062_040 Hb_002025_330--Hb_055062_040 Hb_001377_100 Hb_001377_100 Hb_135572_010--Hb_001377_100 Hb_000363_300 Hb_000363_300 Hb_135572_010--Hb_000363_300 Hb_135572_010--Hb_000922_030 Hb_002639_080--Hb_001188_020 Hb_041327_010 Hb_041327_010 Hb_002639_080--Hb_041327_010 Hb_071130_010 Hb_071130_010 Hb_002639_080--Hb_071130_010 Hb_000069_120 Hb_000069_120 Hb_002639_080--Hb_000069_120 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.30891 5.18329 2.89843 5.87037 4.53119 5.69256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.14232 2.74431 3.74064 8.12503 8.89145

CAGE analysis