Hb_055062_040

Information

Type -
Description -
Location Contig55062: 23490-36471
Sequence    

Annotation

kegg
ID rcu:RCOM_0085480
description ceramidase, putative
nr
ID XP_002527872.1
description ceramidase, putative [Ricinus communis]
swissprot
ID Q304B9
description Neutral ceramidase OS=Arabidopsis thaliana GN=At2g38010 PE=3 SV=1
trembl
ID B9SPF3
description Ceramidase, putative OS=Ricinus communis GN=RCOM_0085480 PE=4 SV=1
Gene Ontology
ID GO:0009506
description neutral ceramidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48263: 23624-36449 , PASA_asmbl_48264: 23788-34363
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055062_040 0.0 - - ceramidase, putative [Ricinus communis]
2 Hb_002025_330 0.0682661698 - - peptide transporter, putative [Ricinus communis]
3 Hb_003280_020 0.0771033816 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
4 Hb_084670_010 0.077396967 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_004048_120 0.0790200743 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
6 Hb_012733_070 0.0790683216 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
7 Hb_002749_060 0.0831339538 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
8 Hb_000237_040 0.0844809338 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
9 Hb_000890_070 0.0853387695 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
10 Hb_002968_080 0.0870155238 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
11 Hb_007558_100 0.087510001 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
12 Hb_179306_020 0.0900297293 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
13 Hb_000358_050 0.0913112053 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
14 Hb_012330_010 0.0918164297 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
15 Hb_004837_280 0.0928285833 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
16 Hb_000575_100 0.093021966 - - PREDICTED: nephrocystin-3 isoform X2 [Jatropha curcas]
17 Hb_001587_030 0.0932528994 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
18 Hb_000649_060 0.0932731851 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
19 Hb_000976_100 0.093625546 - - eukaryotic translation elongation factor, putative [Ricinus communis]
20 Hb_003340_010 0.0939681514 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]

Gene co-expression network

sample Hb_055062_040 Hb_055062_040 Hb_002025_330 Hb_002025_330 Hb_055062_040--Hb_002025_330 Hb_003280_020 Hb_003280_020 Hb_055062_040--Hb_003280_020 Hb_084670_010 Hb_084670_010 Hb_055062_040--Hb_084670_010 Hb_004048_120 Hb_004048_120 Hb_055062_040--Hb_004048_120 Hb_012733_070 Hb_012733_070 Hb_055062_040--Hb_012733_070 Hb_002749_060 Hb_002749_060 Hb_055062_040--Hb_002749_060 Hb_002025_330--Hb_003280_020 Hb_002025_330--Hb_004048_120 Hb_004143_160 Hb_004143_160 Hb_002025_330--Hb_004143_160 Hb_000922_030 Hb_000922_030 Hb_002025_330--Hb_000922_030 Hb_000358_050 Hb_000358_050 Hb_002025_330--Hb_000358_050 Hb_003280_020--Hb_004048_120 Hb_003280_020--Hb_002749_060 Hb_011819_020 Hb_011819_020 Hb_003280_020--Hb_011819_020 Hb_000261_480 Hb_000261_480 Hb_003280_020--Hb_000261_480 Hb_012330_010 Hb_012330_010 Hb_003280_020--Hb_012330_010 Hb_084670_010--Hb_000358_050 Hb_011537_060 Hb_011537_060 Hb_084670_010--Hb_011537_060 Hb_001159_010 Hb_001159_010 Hb_084670_010--Hb_001159_010 Hb_007558_100 Hb_007558_100 Hb_084670_010--Hb_007558_100 Hb_016347_010 Hb_016347_010 Hb_084670_010--Hb_016347_010 Hb_004048_120--Hb_004143_160 Hb_004048_120--Hb_002749_060 Hb_004048_120--Hb_000261_480 Hb_004048_120--Hb_000358_050 Hb_012733_070--Hb_012330_010 Hb_002968_080 Hb_002968_080 Hb_012733_070--Hb_002968_080 Hb_001348_080 Hb_001348_080 Hb_012733_070--Hb_001348_080 Hb_028960_020 Hb_028960_020 Hb_012733_070--Hb_028960_020 Hb_012733_070--Hb_003280_020 Hb_065500_020 Hb_065500_020 Hb_012733_070--Hb_065500_020 Hb_000890_070 Hb_000890_070 Hb_002749_060--Hb_000890_070 Hb_002749_060--Hb_011819_020 Hb_001377_350 Hb_001377_350 Hb_002749_060--Hb_001377_350 Hb_002749_060--Hb_065500_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.28344 8.70249 11.3381 18.9932 7.91335 13.5739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.9134 6.05553 7.57772 24.337 20.7459

CAGE analysis